Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACKVEV_RS16925 Genome accession   NZ_CP176417
Coordinates   3305480..3306052 (-) Length   190 a.a.
NCBI ID   WP_024364645.1    Uniprot ID   A0A4U2Z4N7
Organism   Lysinibacillus sp. 38-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3300480..3311052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVEV_RS16895 - 3301438..3302400 (-) 963 WP_409367450.1 hypothetical protein -
  ACKVEV_RS16900 - 3302422..3302841 (-) 420 WP_409367451.1 hypothetical protein -
  ACKVEV_RS16905 cynS 3303335..3303784 (-) 450 WP_409367452.1 cyanase -
  ACKVEV_RS16910 - 3303813..3304394 (-) 582 WP_409367453.1 beta-class carbonic anhydrase -
  ACKVEV_RS16915 - 3304578..3304991 (+) 414 WP_409370578.1 Lrp/AsnC family transcriptional regulator -
  ACKVEV_RS16920 rpsR 3305196..3305432 (-) 237 WP_010860721.1 30S ribosomal protein S18 -
  ACKVEV_RS16925 ssbA 3305480..3306052 (-) 573 WP_024364645.1 single-stranded DNA-binding protein Machinery gene
  ACKVEV_RS16930 rpsF 3306089..3306379 (-) 291 WP_024364644.1 30S ribosomal protein S6 -
  ACKVEV_RS16935 - 3306553..3307113 (+) 561 WP_409367454.1 DUF3267 domain-containing protein -
  ACKVEV_RS16940 - 3307132..3308172 (-) 1041 WP_409367455.1 acyl-CoA dehydrogenase family protein -
  ACKVEV_RS16945 ychF 3308297..3309397 (-) 1101 WP_409367456.1 redox-regulated ATPase YchF -
  ACKVEV_RS16950 - 3309790..3309990 (-) 201 WP_409370579.1 DUF951 domain-containing protein -
  ACKVEV_RS16955 - 3310046..3310873 (-) 828 WP_409367457.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20599.61 Da        Isoelectric Point: 4.9533

>NTDB_id=1080027 ACKVEV_RS16925 WP_024364645.1 3305480..3306052(-) (ssbA) [Lysinibacillus sp. 38-6]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRTFSNQQGEKEADFISCVAWRKQAENLANFMKKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGGGAPASNQYGGQSYANSQPSYGGGQPQQQYGGAMPQQGSFGGGASYQQNQPP
MNQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=1080027 ACKVEV_RS16925 WP_024364645.1 3305480..3306052(-) (ssbA) [Lysinibacillus sp. 38-6]
ATGATAAATCGTGTCGTATTAGTTGGAAGACTAACAAAAGACCCTGAGCTGCGCTACACACCGAATGGTATTGCGTCTAC
TCGATTTACAGTAGCTGTGAATCGTACATTCTCAAACCAACAAGGTGAAAAAGAAGCAGATTTCATTAGCTGTGTTGCTT
GGCGTAAACAGGCTGAAAACTTAGCGAACTTCATGAAAAAAGGAAGTTTAATTGGAGTAGAAGGTCGTATCCAAACAGGT
AGCTATGAAGGACAAGATGGTAAGCGTGTATATACAACTGATGTTGTGGCAGATAGCGTACAGTTTTTAGAACCTCGTAG
TGGTGGAGGTGCTCCTGCATCTAACCAATACGGTGGACAATCTTACGCAAATAGTCAGCCGTCATATGGCGGTGGACAAC
CACAGCAACAGTATGGTGGCGCAATGCCTCAGCAAGGTTCGTTTGGCGGCGGTGCTTCTTATCAACAAAATCAACCACCG
ATGAATCAGCCGAACTATACACGAGTAGACGAAGATCCATTTGCGAATAGCAAGGGACCGATTGAAGTATCAGAAGACGA
TCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2Z4N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.737

100

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

48.969

100

0.5

Multiple sequence alignment