Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACKWCM_RS11690 Genome accession   NZ_CP176416
Coordinates   2314989..2315324 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain GUCCb3-7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2309989..2320324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWCM_RS11670 (ACKWCM_11670) gcvT 2310477..2311574 (-) 1098 WP_197172671.1 glycine cleavage system aminomethyltransferase GcvT -
  ACKWCM_RS11675 (ACKWCM_11675) - 2312126..2313796 (+) 1671 WP_197172670.1 DEAD/DEAH box helicase -
  ACKWCM_RS11680 (ACKWCM_11680) - 2313811..2314608 (+) 798 WP_197172669.1 YqhG family protein -
  ACKWCM_RS11685 (ACKWCM_11685) - 2314791..2314955 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  ACKWCM_RS11690 (ACKWCM_11690) sinR 2314989..2315324 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  ACKWCM_RS11695 (ACKWCM_11695) tasA 2315392..2316192 (-) 801 WP_024422970.1 biofilm matrix protein TasA -
  ACKWCM_RS11700 (ACKWCM_11700) sipW 2316247..2316819 (-) 573 WP_024422971.1 signal peptidase I SipW -
  ACKWCM_RS11705 (ACKWCM_11705) tapA 2316872..2317399 (-) 528 WP_098677430.1 amyloid fiber anchoring/assembly protein TapA -
  ACKWCM_RS11710 (ACKWCM_11710) - 2317699..2317977 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  ACKWCM_RS11715 (ACKWCM_11715) - 2318011..2318205 (-) 195 WP_056767455.1 YqzE family protein -
  ACKWCM_RS11720 (ACKWCM_11720) - 2318272..2318655 (-) 384 WP_197172668.1 competence type IV pilus minor pilin ComGG -
  ACKWCM_RS11725 (ACKWCM_11725) comGF 2318652..2319179 (-) 528 WP_311164128.1 competence type IV pilus minor pilin ComGF -
  ACKWCM_RS11730 (ACKWCM_11730) comGE 2319091..2319405 (-) 315 WP_087978326.1 competence type IV pilus minor pilin ComGE -
  ACKWCM_RS11735 (ACKWCM_11735) comGD 2319389..2319835 (-) 447 WP_197172667.1 competence type IV pilus minor pilin ComGD -
  ACKWCM_RS11740 (ACKWCM_11740) comGC 2319828..2320121 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=1079974 ACKWCM_RS11690 WP_024422969.1 2314989..2315324(+) (sinR) [Bacillus safensis strain GUCCb3-7]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1079974 ACKWCM_RS11690 WP_024422969.1 2314989..2315324(+) (sinR) [Bacillus safensis strain GUCCb3-7]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment