Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   ACKPXQ_RS14915 Genome accession   NZ_CP176038
Coordinates   3038524..3039483 (-) Length   319 a.a.
NCBI ID   WP_233662477.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3033524..3044483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPXQ_RS14885 (ACKPXQ_14885) - 3033807..3034283 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  ACKPXQ_RS14890 (ACKPXQ_14890) - 3034283..3034567 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  ACKPXQ_RS14895 (ACKPXQ_14895) mnhG 3034551..3034925 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  ACKPXQ_RS14900 (ACKPXQ_14900) - 3034965..3035348 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  ACKPXQ_RS14905 (ACKPXQ_14905) comA 3035370..3036014 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACKPXQ_RS14910 (ACKPXQ_14910) comP 3036095..3038398 (-) 2304 WP_021495364.1 histidine kinase Regulator
  ACKPXQ_RS14915 (ACKPXQ_14915) comQ 3038524..3039483 (-) 960 WP_233662477.1 class 1 isoprenoid biosynthesis enzyme Regulator
  ACKPXQ_RS14920 (ACKPXQ_14920) degQ 3039668..3039808 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACKPXQ_RS14925 (ACKPXQ_14925) - 3040274..3040615 (+) 342 WP_007613435.1 hypothetical protein -
  ACKPXQ_RS14930 (ACKPXQ_14930) - 3040622..3041845 (-) 1224 WP_007613436.1 EAL and HDOD domain-containing protein -
  ACKPXQ_RS14935 (ACKPXQ_14935) - 3041975..3043441 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  ACKPXQ_RS14940 (ACKPXQ_14940) - 3043459..3044010 (-) 552 WP_003152033.1 cysteine hydrolase family protein -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 36655.97 Da        Isoelectric Point: 5.1474

>NTDB_id=1079537 ACKPXQ_RS14915 WP_233662477.1 3038524..3039483(-) (comQ) [Bacillus velezensis strain A4]
MKSIIERNIFNEHLMQLLLSFIEPKKNFSLAESAVLHYVIFDGENQETAVNLGAAIEILTLTSDIIDDLEDEDNRDAPWM
KIDRSLALSAAFSLYTAGLQSINSISTNPLVIKYVLKYIQDAMQGQHDDLINKPKTEDECLEVIKLKCGSLFALANVTGT
LLATGEFNKSVESYSYYKGIFEQISGDYHAIFKDNTSDILKDKHTLINLYLKRLFNKSSQELLCIFSDQKLYSQLRLNKK
EFIQKLYDSGASQYVSVLYQLYMYKCETEVENLNLDIKKIKIIKKHLLNNKNNKKDDEDAEFNKLFFELSGCIKETEKQ

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1079537 ACKPXQ_RS14915 WP_233662477.1 3038524..3039483(-) (comQ) [Bacillus velezensis strain A4]
ATGAAGAGTATAATAGAGCGGAACATATTTAATGAACATCTAATGCAGCTCCTTCTCAGTTTTATTGAACCAAAAAAAAA
TTTTTCTCTAGCTGAATCAGCTGTTTTGCATTATGTGATCTTTGACGGCGAAAATCAAGAAACCGCAGTGAACTTAGGTG
CCGCTATTGAAATTCTTACACTTACTTCCGATATAATTGATGATCTGGAAGATGAGGATAATCGAGATGCTCCTTGGATG
AAGATAGATCGTTCACTAGCATTAAGTGCAGCATTTTCATTATACACAGCAGGATTGCAAAGCATTAATTCGATTAGTAC
GAATCCTTTAGTGATTAAGTATGTATTAAAATATATTCAAGATGCAATGCAGGGTCAACATGATGATTTGATCAATAAAC
CAAAGACAGAAGATGAATGTTTAGAGGTAATCAAGTTAAAATGCGGAAGTTTATTTGCGTTAGCAAATGTTACTGGTACG
CTTTTAGCAACTGGAGAATTCAATAAGTCTGTTGAAAGTTATTCCTATTATAAAGGGATATTTGAACAAATTTCCGGCGA
TTATCATGCTATTTTTAAGGATAATACTAGTGATATTCTGAAAGATAAACATACATTGATTAATTTATATCTTAAGCGCT
TGTTTAATAAGTCTTCTCAAGAATTGCTTTGTATATTCTCAGATCAAAAATTATATTCGCAACTGCGGCTTAATAAAAAA
GAGTTTATTCAAAAGCTGTATGATTCTGGAGCATCTCAATATGTTTCGGTTTTATACCAACTATACATGTATAAGTGTGA
AACTGAAGTTGAAAATTTAAATTTAGATATAAAGAAGATAAAAATAATAAAAAAACACTTGTTGAATAATAAGAATAATA
AGAAGGATGATGAAGATGCAGAATTTAATAAATTATTTTTTGAATTATCCGGATGTATTAAAGAAACTGAAAAGCAATGA

Domains


Predicted by InterproScan.

(41-214)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

61.938

90.596

0.561


Multiple sequence alignment