Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACKPXQ_RS01770 Genome accession   NZ_CP176038
Coordinates   332530..332967 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 327530..337967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPXQ_RS01745 (ACKPXQ_01745) - 328550..329686 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  ACKPXQ_RS01750 (ACKPXQ_01750) - 329701..330135 (+) 435 WP_014416871.1 RDD family protein -
  ACKPXQ_RS01755 (ACKPXQ_01755) - 330252..330530 (+) 279 WP_374978596.1 YckD family protein -
  ACKPXQ_RS01760 (ACKPXQ_01760) - 330634..332070 (+) 1437 WP_174532722.1 glycoside hydrolase family 1 protein -
  ACKPXQ_RS01765 (ACKPXQ_01765) nin/comJ 332111..332509 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  ACKPXQ_RS01770 (ACKPXQ_01770) nucA/comI 332530..332967 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACKPXQ_RS01775 (ACKPXQ_01775) hxlB 333298..333855 (-) 558 WP_061861836.1 6-phospho-3-hexuloisomerase -
  ACKPXQ_RS01780 (ACKPXQ_01780) hxlA 333852..334487 (-) 636 WP_182072283.1 3-hexulose-6-phosphate synthase -
  ACKPXQ_RS01785 (ACKPXQ_01785) - 334719..335081 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1079484 ACKPXQ_RS01770 WP_003156588.1 332530..332967(-) (nucA/comI) [Bacillus velezensis strain A4]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1079484 ACKPXQ_RS01770 WP_003156588.1 332530..332967(-) (nucA/comI) [Bacillus velezensis strain A4]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment