Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   ACKPXQ_RS01765 Genome accession   NZ_CP176038
Coordinates   332111..332509 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 327111..337509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPXQ_RS01740 (ACKPXQ_01740) - 327283..328485 (+) 1203 WP_014416870.1 GTP-binding protein -
  ACKPXQ_RS01745 (ACKPXQ_01745) - 328550..329686 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  ACKPXQ_RS01750 (ACKPXQ_01750) - 329701..330135 (+) 435 WP_014416871.1 RDD family protein -
  ACKPXQ_RS01755 (ACKPXQ_01755) - 330252..330530 (+) 279 WP_374978596.1 YckD family protein -
  ACKPXQ_RS01760 (ACKPXQ_01760) - 330634..332070 (+) 1437 WP_174532722.1 glycoside hydrolase family 1 protein -
  ACKPXQ_RS01765 (ACKPXQ_01765) nin/comJ 332111..332509 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  ACKPXQ_RS01770 (ACKPXQ_01770) nucA/comI 332530..332967 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACKPXQ_RS01775 (ACKPXQ_01775) hxlB 333298..333855 (-) 558 WP_061861836.1 6-phospho-3-hexuloisomerase -
  ACKPXQ_RS01780 (ACKPXQ_01780) hxlA 333852..334487 (-) 636 WP_182072283.1 3-hexulose-6-phosphate synthase -
  ACKPXQ_RS01785 (ACKPXQ_01785) - 334719..335081 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=1079483 ACKPXQ_RS01765 WP_007609299.1 332111..332509(-) (nin/comJ) [Bacillus velezensis strain A4]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1079483 ACKPXQ_RS01765 WP_007609299.1 332111..332509(-) (nin/comJ) [Bacillus velezensis strain A4]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCTATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment