Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACKN8U_RS10560 Genome accession   NZ_CP176035
Coordinates   2268367..2269788 (-) Length   473 a.a.
NCBI ID   WP_031821671.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain L2181     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2263367..2274788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKN8U_RS10535 (ACKN8U_10535) - 2263931..2264581 (+) 651 WP_025628913.1 thiopurine S-methyltransferase -
  ACKN8U_RS10540 (ACKN8U_10540) purT 2264683..2265858 (-) 1176 WP_005495504.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACKN8U_RS10545 (ACKN8U_10545) cdd 2266006..2266893 (-) 888 WP_020840481.1 cytidine deaminase -
  ACKN8U_RS10550 (ACKN8U_10550) - 2267258..2267935 (-) 678 WP_140359941.1 LrgB family protein -
  ACKN8U_RS10555 (ACKN8U_10555) - 2267937..2268311 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  ACKN8U_RS10560 (ACKN8U_10560) sbcB 2268367..2269788 (-) 1422 WP_031821671.1 exodeoxyribonuclease I Machinery gene
  ACKN8U_RS10565 (ACKN8U_10565) - 2269944..2271317 (-) 1374 WP_005486634.1 L-cystine transporter -
  ACKN8U_RS10570 (ACKN8U_10570) - 2271511..2272206 (-) 696 WP_017448627.1 NAD(P)H-binding protein -
  ACKN8U_RS10575 (ACKN8U_10575) cobT 2272890..2273933 (+) 1044 WP_021453099.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACKN8U_RS10580 (ACKN8U_10580) - 2273978..2274730 (+) 753 WP_031792000.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54683.97 Da        Isoelectric Point: 5.0454

>NTDB_id=1079469 ACKN8U_RS10560 WP_031821671.1 2268367..2269788(-) (sbcB) [Vibrio parahaemolyticus strain L2181]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRERQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKQVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1079469 ACKN8U_RS10560 WP_031821671.1 2268367..2269788(-) (sbcB) [Vibrio parahaemolyticus strain L2181]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCGCTGGTGATGTACTGCCAGCTTCCTGCCG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAACGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAATGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACAGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCCCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.747

100

0.799

Multiple sequence alignment