Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACKN8U_RS01030 Genome accession   NZ_CP176035
Coordinates   240444..241058 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain L2181     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 235444..246058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKN8U_RS01010 (ACKN8U_01010) - 235728..236645 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  ACKN8U_RS01015 (ACKN8U_01015) - 236898..238568 (-) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  ACKN8U_RS01020 (ACKN8U_01020) can 238852..239520 (+) 669 WP_005462578.1 carbonate dehydratase -
  ACKN8U_RS01025 (ACKN8U_01025) hpt 239595..240125 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  ACKN8U_RS01030 (ACKN8U_01030) opaR 240444..241058 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  ACKN8U_RS01035 (ACKN8U_01035) lpdA 241186..242613 (-) 1428 WP_021823119.1 dihydrolipoyl dehydrogenase -
  ACKN8U_RS01040 (ACKN8U_01040) aceF 242882..244768 (-) 1887 WP_193282218.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=1079432 ACKN8U_RS01030 WP_005479697.1 240444..241058(+) (opaR) [Vibrio parahaemolyticus strain L2181]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1079432 ACKN8U_RS01030 WP_005479697.1 240444..241058(+) (opaR) [Vibrio parahaemolyticus strain L2181]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCCGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGACCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTGGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment