Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACKQF3_RS16435 Genome accession   NZ_CP175807
Coordinates   485740..486909 (-) Length   389 a.a.
NCBI ID   WP_248426579.1    Uniprot ID   -
Organism   Vibrio cholerae strain N19-2759     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 480740..491909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKQF3_RS16430 (ACKQF3_16430) cqsS 483578..485638 (+) 2061 WP_316997566.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  ACKQF3_RS16435 (ACKQF3_16435) cqsA 485740..486909 (-) 1170 WP_248426579.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACKQF3_RS16440 (ACKQF3_16440) - 487106..488068 (-) 963 WP_001104009.1 TDT family transporter -
  ACKQF3_RS16445 (ACKQF3_16445) clcA 488215..489621 (-) 1407 WP_317006701.1 H(+)/Cl(-) exchange transporter ClcA -
  ACKQF3_RS16450 (ACKQF3_16450) - 490090..491079 (+) 990 WP_000610711.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43550.60 Da        Isoelectric Point: 6.2269

>NTDB_id=1078998 ACKQF3_RS16435 WP_248426579.1 485740..486909(-) (cqsA) [Vibrio cholerae strain N19-2759]
MNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESAENRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVSDEQITKIIEVCSDAVNCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=1078998 ACKQF3_RS16435 WP_248426579.1 485740..486909(-) (cqsA) [Vibrio cholerae strain N19-2759]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGAACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTTGTATTGGGTAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTCTGGCTAAGTTCACAGGCTTTGATGAATGTCTATTATCTCAATC
TGGTTGGAACGCAAACGTCGGTTTATTACAAACCATCTGCCAGCCCAATACGAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTGTGGGAAGGGGCACGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTGATTCAACGTCATGGTCCCGGGATCATTGTCGTAGACTCGATTTACAGCACGTTAGGTACGATTGCACCGCTAGCGGA
ACTGGTCAATATCAGCAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGCACACATGGCCCTAATG
GTGCAGGTTTATTGGCAGAATTAGGCCTCACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGTAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCGGCTATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACGACTTTAGAGATTATTGAATCTGCGGAGAATCGTCGTCAGCATTTAG
ATCGTATGGCAAGAAAATTACGCATAGGATTATCCCAGTTGGGATTAACCATTCGAAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTGTTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCGAAGAATAAAAACATTATTCGTTTATCACTCAATAGTGATGTGAGCGATGAACAAATCACCAAAATAA
TTGAGGTTTGCTCTGATGCGGTCAACTGTGGTGATTTTTATTTCCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

98.972

100

0.99

Multiple sequence alignment