Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   ACKQF3_RS16430 Genome accession   NZ_CP175807
Coordinates   483578..485638 (+) Length   686 a.a.
NCBI ID   WP_316997566.1    Uniprot ID   -
Organism   Vibrio cholerae strain N19-2759     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 478578..490638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKQF3_RS16420 (ACKQF3_16420) - 479299..480438 (+) 1140 WP_032471593.1 exonuclease SbcCD subunit D -
  ACKQF3_RS16425 (ACKQF3_16425) - 480440..483481 (+) 3042 WP_032471594.1 AAA family ATPase -
  ACKQF3_RS16430 (ACKQF3_16430) cqsS 483578..485638 (+) 2061 WP_316997566.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  ACKQF3_RS16435 (ACKQF3_16435) cqsA 485740..486909 (-) 1170 WP_248426579.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACKQF3_RS16440 (ACKQF3_16440) - 487106..488068 (-) 963 WP_001104009.1 TDT family transporter -
  ACKQF3_RS16445 (ACKQF3_16445) clcA 488215..489621 (-) 1407 WP_317006701.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78297.20 Da        Isoelectric Point: 5.6283

>NTDB_id=1078997 ACKQF3_RS16430 WP_316997566.1 483578..485638(+) (cqsS) [Vibrio cholerae strain N19-2759]
MIVSMDVIKRVYQYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQSYENLGLRCAAAVLFGGLVFRDSMPKKWQRYMPGYFL
FTIGFCLPFFFAFMMLMNDWSTIWAMSFMASIFLHILLVHDTRVMALQALFSVLVAYLAVYGLTDFHPTTLIEWQYIPIF
LFTYVFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFDFFGSDTLLTYALFN
LLKNAFYYQKEHFSVRISIEQTREQNLIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMSAFGGTIRCAS
QQGQWTEFVLSFPRYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVEDEFGFTAISAQQAVRRQDYEFEFDLILL
DLDDAIAQGELLPKLEGTLSFAGGCIGYVYDPGKTYAVNINRYLRIQPISIHSILRKPKTIIERLLFEQESLSMNRNMIP
LQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRGSEHAY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=1078997 ACKQF3_RS16430 WP_316997566.1 483578..485638(+) (cqsS) [Vibrio cholerae strain N19-2759]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCAATACGCAGAACCTAATCTGTCCTTAGTCGGATGGATGGGCAT
GCTTGGCTTTCCTGCCTACTACTTCATCTGGGAATATTGGTTTCCGCAATCTTACGAAAATTTAGGGCTGCGCTGTGCGG
CAGCGGTGCTGTTTGGTGGGCTGGTGTTTCGTGATTCGATGCCTAAGAAATGGCAGCGGTATATGCCGGGCTATTTTCTA
TTCACCATAGGTTTCTGCTTACCCTTTTTCTTCGCTTTTATGATGTTAATGAACGACTGGTCGACAATTTGGGCCATGTC
GTTTATGGCGTCCATTTTTCTGCATATTCTCTTAGTGCACGATACGAGAGTGATGGCGTTACAAGCTCTTTTCTCCGTGT
TGGTGGCCTATCTTGCGGTATATGGTTTGACGGATTTTCACCCGACCACTTTGATTGAATGGCAATACATACCGATCTTT
TTGTTTACTTATGTATTTGGGAATTTATGTTTTTTCCGTAACCAAATTTCTCATGAGACCAAAGTGTCGATTGCCAAAAC
GTTCGGAGCGGGGATTGCCCATGAAATGCGTAATCCACTCAGCGCTTTGAAAACGTCGATTGATGTTGTGCGAACCATGA
TCCCTAAACCGCAAACTGCAGCTCATACGGATTATTCCTTGGATGCGCAAGAGCTGGATCTGCTGCATCAAATTTTGAAT
GAAGCTGATGATGTCATCTACTCTGGCAATAACGCGATTGATTTGCTGCTCACCTCGATTGATGAAAACCGCGTCTCTCC
GGCGAGTTTTAAAAAACACTCCGTAGTGGATGTGATTGAAAAAGCTGTGAAAACTTTTCCGTATAAAAATGCAGCGGACC
AGCACTCGGTAGAGCTTGAAGTGCATCAGCCGTTTGACTTTTTTGGCAGTGATACTCTACTGACTTATGCGCTATTTAAC
CTGTTGAAAAATGCCTTCTATTATCAAAAAGAGCATTTCTCGGTTCGTATTTCCATTGAACAAACCCGTGAGCAGAACCT
TATTCGAGTCCGTGATAACGGCGTGGGGATTGCGCCAGAGATGTTGGAAGACATTTTCCGTGATTTCTATACCTTCGGTA
AAAATGGCAGCTATGGGCTAGGATTGCCATTTTGCCGCAAAGTGATGTCCGCATTTGGGGGGACGATTCGCTGTGCGTCT
CAACAAGGTCAATGGACAGAATTCGTATTGAGCTTTCCTCGTTACGATTCCGATACGGTTAACGAGATAAAAACAGAACT
GCTGAAAACCAAATCGCTCATTTATATCGGCTCAAATCAAGCTATCGTTCGAGAGTTAAATCAGCTCGCAGTAGAAGATG
AGTTTGGTTTTACCGCTATTTCTGCGCAGCAAGCAGTAAGACGCCAAGATTATGAGTTTGAGTTCGACCTTATTTTGCTC
GACCTTGATGACGCTATAGCGCAGGGAGAGTTGCTGCCCAAACTCGAAGGTACATTGAGTTTTGCAGGAGGTTGTATCGG
CTATGTGTATGACCCAGGTAAAACGTATGCGGTAAACATCAATCGTTATCTGCGCATCCAACCGATCAGTATTCACTCTA
TTCTCAGAAAGCCTAAGACAATCATCGAGCGCTTGTTGTTTGAACAAGAGTCTTTATCGATGAATCGTAACATGATCCCT
TTGCAAAAGAGTCGGCATGAACGGCGCATTTTGGTGGTTGACGATAATCAATCGATCCGAACTTTTACGGCCATTTTGCT
TGAACAACAAGGCTATGAAGTGGTGCAAGCCAACGATGGGAGTGAAGTGCTCAAGCATATGGAGAGCCAAAACATCGATT
TAGTGTTGATGGACATTGAAATGCCCAATGTTGGTGGATTGGAAGCGACGCGTTTAATTCGTGGCTCTGAACATGCTTAC
AAAAATATTCCGATCATCGGTTATACCGGTGATAACAGCCCCAAAACTTTGGCTCTGGTACAAACCTCTGGCATGAATGA
TTTTATTGTCAAGCCAGCGGACCGTGATGTATTGCTAAATAAAGTGGCAGCTTGGGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-413)

Response regulator receiver domain (Response_reg)

(570-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

98.542

100

0.985

Multiple sequence alignment