Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACJ23B_RS13090 Genome accession   NZ_CP175653
Coordinates   2574576..2575394 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain NIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2569576..2580394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ23B_RS13075 (ACJ23B_13095) pilE 2569793..2570218 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ACJ23B_RS13080 (ACJ23B_13100) pilY2 2570215..2570697 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ACJ23B_RS13085 (ACJ23B_13105) pilY1 2570710..2574564 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  ACJ23B_RS13090 (ACJ23B_13110) pilX 2574576..2575394 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACJ23B_RS13095 (ACJ23B_13115) pilW 2575391..2576392 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  ACJ23B_RS13100 (ACJ23B_13120) pilV 2576393..2576953 (-) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  ACJ23B_RS13105 (ACJ23B_13125) fimU 2576947..2577420 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACJ23B_RS13110 (ACJ23B_13130) ispH 2577590..2578540 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACJ23B_RS13115 (ACJ23B_13135) gmk 2578663..2579292 (+) 630 WP_000015937.1 guanylate kinase -
  ACJ23B_RS13120 (ACJ23B_13140) rpoZ 2579365..2579643 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACJ23B_RS13125 (ACJ23B_13145) - 2579682..2579812 (+) 131 Protein_2429 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1078482 ACJ23B_RS13090 WP_000149374.1 2574576..2575394(-) (pilX) [Acinetobacter baumannii strain NIH1]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1078482 ACJ23B_RS13090 WP_000149374.1 2574576..2575394(-) (pilX) [Acinetobacter baumannii strain NIH1]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment