Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACJU26_RS04030 Genome accession   NZ_CP175559
Coordinates   774122..774928 (-) Length   268 a.a.
NCBI ID   WP_414041255.1    Uniprot ID   -
Organism   Acidithiobacillus sp. M4-SHS-6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 769122..779928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJU26_RS03985 (ACJU26_03985) - 769766..770089 (-) 324 WP_414041247.1 hypothetical protein -
  ACJU26_RS03990 (ACJU26_03990) - 770082..770315 (+) 234 WP_414041248.1 glycoside hydrolase family protein -
  ACJU26_RS03995 (ACJU26_03995) - 770359..770553 (+) 195 WP_414041926.1 glycoside hydrolase family protein -
  ACJU26_RS04000 (ACJU26_04000) - 770629..770964 (+) 336 WP_414041249.1 helix-turn-helix domain-containing protein -
  ACJU26_RS04005 (ACJU26_04005) - 770978..771724 (+) 747 WP_414041250.1 DUF5131 family protein -
  ACJU26_RS04010 (ACJU26_04010) - 771721..772548 (-) 828 WP_414041251.1 three-Cys-motif partner protein TcmP -
  ACJU26_RS04015 (ACJU26_04015) - 772607..773383 (-) 777 WP_414041252.1 SMODS domain-containing nucleotidyltransferase -
  ACJU26_RS04020 (ACJU26_04020) - 773388..773909 (-) 522 WP_414041253.1 SLATT domain-containing protein -
  ACJU26_RS04025 (ACJU26_04025) - 773937..774125 (-) 189 WP_414041254.1 hypothetical protein -
  ACJU26_RS04030 (ACJU26_04030) comEC 774122..774928 (-) 807 WP_414041255.1 ComEC/Rec2 family competence protein Machinery gene
  ACJU26_RS04035 (ACJU26_04035) - 774947..775903 (-) 957 WP_414041256.1 hypothetical protein -
  ACJU26_RS04040 (ACJU26_04040) - 775900..776568 (-) 669 WP_414041257.1 hypothetical protein -
  ACJU26_RS04045 (ACJU26_04045) - 776590..779436 (-) 2847 WP_414041258.1 ATP-binding protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30399.02 Da        Isoelectric Point: 5.1589

>NTDB_id=1078192 ACJU26_RS04030 WP_414041255.1 774122..774928(-) (comEC) [Acidithiobacillus sp. M4-SHS-6]
MELKIFDVEHGACALLTCDNGTRLMIDCGHNGDTGWRPGRYLRDQGISRLEMLAITNYDEDHVSGLPDLLENVDVEWLWR
NRSVTPDTIRQLKSEDGLGRGIETLVGMTSSYSGGTEATPSTFLGVERQAFYNDYPEFDDENNLSMVVHLWIAGINFLFP
GDLESSGWKALLRQPGFQKVVSETHVLIASHHGRENGICTDVFDNYGCKPFYVVISDKGYMYDTQRTVPYYRSKARGGPF
RGETRHVLTTRNDGRIAFVFQNGQWWPQ

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1078192 ACJU26_RS04030 WP_414041255.1 774122..774928(-) (comEC) [Acidithiobacillus sp. M4-SHS-6]
ATGGAGCTGAAGATATTCGATGTCGAGCACGGTGCCTGCGCGTTGCTAACCTGCGATAATGGTACTCGCCTGATGATTGA
CTGCGGGCACAATGGGGATACCGGATGGAGGCCGGGGCGCTACCTGCGTGATCAAGGCATATCACGCCTTGAGATGCTGG
CGATCACGAACTACGACGAGGATCATGTCAGCGGTTTGCCGGACTTGCTGGAGAACGTGGATGTCGAATGGCTGTGGCGA
AATCGGTCAGTAACGCCAGATACCATCCGCCAGCTCAAATCCGAGGACGGCTTGGGTCGCGGCATTGAAACCTTGGTTGG
TATGACTTCAAGCTACAGCGGCGGGACAGAGGCAACCCCATCGACATTCTTGGGAGTCGAGCGGCAGGCCTTTTACAACG
ACTACCCCGAGTTTGATGATGAAAACAACCTGAGCATGGTTGTGCACCTCTGGATCGCAGGCATCAATTTCCTGTTTCCG
GGCGATCTTGAATCGTCAGGGTGGAAAGCACTGCTCCGTCAGCCTGGCTTCCAGAAAGTCGTATCCGAAACGCACGTCCT
GATTGCTTCGCACCATGGCCGCGAGAATGGAATTTGCACCGATGTTTTCGATAACTACGGATGCAAGCCGTTCTACGTTG
TCATTTCAGACAAAGGGTACATGTACGACACCCAGAGAACGGTTCCTTACTATCGCAGTAAAGCTCGGGGCGGGCCATTC
AGGGGAGAGACGAGACACGTTCTGACAACGAGAAATGACGGAAGGATCGCGTTTGTCTTTCAGAACGGTCAATGGTGGCC
GCAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila str. Paris

61.686

97.388

0.601

Multiple sequence alignment