Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   ACKFA7_RS16490 Genome accession   NZ_CP175553
Coordinates   3388198..3389361 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3383198..3394361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS16460 (ACKFA7_16460) - 3383463..3383882 (-) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  ACKFA7_RS16465 (ACKFA7_16465) comFC 3383956..3384645 (-) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  ACKFA7_RS16470 (ACKFA7_16470) - 3384651..3384935 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACKFA7_RS16475 (ACKFA7_16475) comFA 3384993..3386378 (-) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  ACKFA7_RS16480 (ACKFA7_16480) - 3386486..3387334 (-) 849 WP_003151387.1 DegV family protein -
  ACKFA7_RS16485 (ACKFA7_16485) degU 3387432..3388121 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACKFA7_RS16490 (ACKFA7_16490) degS 3388198..3389361 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACKFA7_RS16495 (ACKFA7_16495) - 3389584..3390231 (+) 648 WP_007407485.1 YigZ family protein -
  ACKFA7_RS16500 (ACKFA7_16500) - 3390236..3391456 (+) 1221 WP_038460047.1 LCP family protein -
  ACKFA7_RS16505 (ACKFA7_16505) - 3391555..3392631 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  ACKFA7_RS16510 (ACKFA7_16510) tuaH 3392764..3393960 (-) 1197 WP_038460049.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=1078173 ACKFA7_RS16490 WP_007407484.1 3388198..3389361(-) (degS) [Bacillus amyloliquefaciens strain 4-9-2]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=1078173 ACKFA7_RS16490 WP_007407484.1 3388198..3389361(-) (degS) [Bacillus amyloliquefaciens strain 4-9-2]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCATGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGCGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATTATTGAAC
GGTCAGAATCATTAGTCAGCCAAATAACCGTCGTTTTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGATGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTACGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACAGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment