Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACKFA7_RS16465 Genome accession   NZ_CP175553
Coordinates   3383956..3384645 (-) Length   229 a.a.
NCBI ID   WP_199910472.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3378956..3389645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS16430 (ACKFA7_16430) fliW 3379047..3379478 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  ACKFA7_RS16435 (ACKFA7_16435) - 3379508..3380077 (-) 570 WP_038460037.1 DUF6470 family protein -
  ACKFA7_RS16440 (ACKFA7_16440) flgL 3380168..3381085 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  ACKFA7_RS16445 (ACKFA7_16445) flgK 3381097..3382614 (-) 1518 WP_038460039.1 flagellar hook-associated protein FlgK -
  ACKFA7_RS16450 (ACKFA7_16450) - 3382630..3383112 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACKFA7_RS16455 (ACKFA7_16455) flgM 3383127..3383393 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACKFA7_RS16460 (ACKFA7_16460) - 3383463..3383882 (-) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  ACKFA7_RS16465 (ACKFA7_16465) comFC 3383956..3384645 (-) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  ACKFA7_RS16470 (ACKFA7_16470) - 3384651..3384935 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACKFA7_RS16475 (ACKFA7_16475) comFA 3384993..3386378 (-) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  ACKFA7_RS16480 (ACKFA7_16480) - 3386486..3387334 (-) 849 WP_003151387.1 DegV family protein -
  ACKFA7_RS16485 (ACKFA7_16485) degU 3387432..3388121 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACKFA7_RS16490 (ACKFA7_16490) degS 3388198..3389361 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25255.87 Da        Isoelectric Point: 8.0697

>NTDB_id=1078170 ACKFA7_RS16465 WP_199910472.1 3383956..3384645(-) (comFC) [Bacillus amyloliquefaciens strain 4-9-2]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLYQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1078170 ACKFA7_RS16465 WP_199910472.1 3383956..3384645(-) (comFC) [Bacillus amyloliquefaciens strain 4-9-2]
CTGAATTGTTTATTGTGTGATTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTTTACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment