Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACKFA7_RS14555 Genome accession   NZ_CP175553
Coordinates   3011728..3012372 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3006728..3017372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS14520 (ACKFA7_14520) - 3007913..3008344 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  ACKFA7_RS14525 (ACKFA7_14525) - 3008344..3008685 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ACKFA7_RS14530 (ACKFA7_14530) - 3008678..3010159 (+) 1482 WP_038459658.1 Na+/H+ antiporter subunit D -
  ACKFA7_RS14535 (ACKFA7_14535) - 3010165..3010641 (+) 477 WP_038459660.1 Na+/H+ antiporter subunit E -
  ACKFA7_RS14540 (ACKFA7_14540) - 3010641..3010925 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  ACKFA7_RS14545 (ACKFA7_14545) mnhG 3010909..3011283 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  ACKFA7_RS14550 (ACKFA7_14550) - 3011323..3011706 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  ACKFA7_RS14555 (ACKFA7_14555) comA 3011728..3012372 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACKFA7_RS14560 (ACKFA7_14560) comP 3012453..3014744 (-) 2292 WP_038459663.1 histidine kinase Regulator
  ACKFA7_RS14565 (ACKFA7_14565) comX 3014756..3014920 (-) 165 WP_007613432.1 competence pheromone ComX -
  ACKFA7_RS14570 (ACKFA7_14570) - 3014920..3015831 (-) 912 WP_079891857.1 polyprenyl synthetase family protein -
  ACKFA7_RS14575 (ACKFA7_14575) degQ 3015983..3016123 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACKFA7_RS14580 (ACKFA7_14580) - 3016589..3016930 (+) 342 WP_038459666.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1078165 ACKFA7_RS14555 WP_003152052.1 3011728..3012372(-) (comA) [Bacillus amyloliquefaciens strain 4-9-2]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1078165 ACKFA7_RS14555 WP_003152052.1 3011728..3012372(-) (comA) [Bacillus amyloliquefaciens strain 4-9-2]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment