Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACJYYY_RS03335 Genome accession   NZ_CP175511
Coordinates   645870..647684 (+) Length   604 a.a.
NCBI ID   WP_408605185.1    Uniprot ID   -
Organism   Brochothrix campestris strain DSM 4712     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 640870..652684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJYYY_RS03305 (ACJYYY_03305) - 640981..641175 (+) 195 WP_035314853.1 FUSC family protein -
  ACJYYY_RS03310 (ACJYYY_03310) - 641293..641763 (+) 471 WP_035314854.1 glutathione peroxidase -
  ACJYYY_RS03315 (ACJYYY_03315) trpS 641809..642795 (-) 987 WP_408869104.1 tryptophan--tRNA ligase -
  ACJYYY_RS03320 (ACJYYY_03320) spxA 643270..643677 (+) 408 WP_035314855.1 transcriptional regulator SpxA -
  ACJYYY_RS03325 (ACJYYY_03325) mecA 643895..644572 (+) 678 WP_035314856.1 adaptor protein MecA -
  ACJYYY_RS03330 (ACJYYY_03330) - 644677..645783 (+) 1107 WP_035314761.1 competence protein CoiA -
  ACJYYY_RS03335 (ACJYYY_03335) pepF 645870..647684 (+) 1815 WP_408605185.1 oligoendopeptidase F Regulator
  ACJYYY_RS03340 (ACJYYY_03340) - 648026..648250 (+) 225 Protein_623 transporter substrate-binding domain-containing protein -
  ACJYYY_RS03345 (ACJYYY_03345) - 648704..650128 (+) 1425 WP_408605184.1 amino acid ABC transporter substrate-binding protein/permease -
  ACJYYY_RS03350 (ACJYYY_03350) - 650109..650837 (+) 729 WP_408869105.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 68368.62 Da        Isoelectric Point: 4.6312

>NTDB_id=1077883 ACJYYY_RS03335 WP_408605185.1 645870..647684(+) (pepF) [Brochothrix campestris strain DSM 4712]
MKMATKVVLRTEVPVEDTWDLTTIFTSDESWESEFKAVQQLTDEAVRFKGTLAESADQLLSALQFSDELVVRLSKVYVYA
SMKHDQDTGNTVYQALNSRAESLASKASAALSFMEPELLAVADETIATYVYESAQLRVYAHELEKITNKRAHTLSDKEEA
LLAKAGEVLNASQNTFGILNNADLRFPSIEDENGETVEITHGLYGPLLESKDRRVRRDAFQNVYQTYKALLNTFASTLTG
QIKEDNFRAEVKQFTDAREAAVFSNNIPQTVHQTLLETVGNNVDLLHRYVRLRKQVLAVDELHVYDLYTPLVADVDELSF
TYEEAKAVTIAALAPLGEEYVSILKEGFDKRWVDVVENKGKRSGAYSGGSYGTNPFILLNWHDTLDNLYTLVHEFGHSVH
SYLTRNNQPAVYGDYTIFLAEIASTTNENLLTDYLLKTYEDEKIQAYIINHFLDGFKGTVFRQTQFAEFEHEIHLADQAG
KALTAEFLTELYYGINKKYYGDTLVHDEEIGYEWARIPHFYYNYYVYQYATGFSAASALAQHILTEGEPAVARYLTFLKA
GNSDYPIDVLKAAGVDMTTAKPIEDALKVFETRLSEFEEIMAKK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1077883 ACJYYY_RS03335 WP_408605185.1 645870..647684(+) (pepF) [Brochothrix campestris strain DSM 4712]
ATAAAAATGGCAACAAAAGTGGTTTTACGTACAGAAGTACCGGTTGAAGACACGTGGGATTTAACAACAATTTTTACATC
AGATGAAAGCTGGGAAAGCGAATTTAAAGCCGTACAACAATTGACAGACGAGGCAGTGCGTTTCAAAGGAACCCTTGCTG
AATCGGCAGACCAACTGTTGTCAGCCTTACAGTTTAGTGATGAACTAGTCGTTAGACTATCAAAAGTTTATGTCTATGCG
AGCATGAAGCATGATCAAGATACCGGGAACACCGTCTATCAGGCGTTAAATAGTCGGGCCGAATCATTGGCATCTAAAGC
GTCAGCAGCTTTATCATTTATGGAACCCGAACTACTAGCGGTTGCGGATGAAACAATTGCTACCTACGTATACGAATCAG
CGCAATTACGTGTGTATGCCCATGAATTAGAAAAAATCACAAATAAGCGTGCGCATACGCTATCAGATAAAGAAGAAGCG
TTATTAGCAAAAGCGGGTGAAGTTTTAAATGCCTCACAAAATACATTCGGTATTTTAAATAACGCGGACCTTCGTTTTCC
GTCGATTGAAGATGAAAATGGTGAAACGGTTGAAATCACCCATGGCTTATATGGGCCACTGTTAGAAAGTAAAGACCGTC
GCGTCCGTCGTGACGCGTTTCAAAACGTTTATCAAACATATAAAGCATTGTTAAATACGTTTGCCTCGACATTAACTGGG
CAAATTAAAGAAGATAATTTCCGTGCGGAAGTTAAACAATTTACTGACGCGCGTGAAGCTGCGGTGTTTAGTAATAACAT
TCCGCAAACGGTTCATCAAACATTGTTGGAAACTGTAGGCAATAACGTTGACTTACTTCACCGTTATGTACGTTTACGCA
AACAGGTGCTAGCTGTGGATGAACTCCATGTTTATGATTTATATACACCGTTAGTTGCAGATGTTGACGAATTATCGTTC
ACTTATGAGGAAGCAAAAGCTGTGACAATTGCGGCGCTCGCACCTCTCGGCGAAGAATATGTCAGTATTTTAAAAGAAGG
TTTTGATAAACGCTGGGTTGACGTCGTTGAAAACAAAGGCAAGCGCAGTGGTGCCTACTCGGGTGGCTCATACGGAACGA
ATCCTTTTATCCTCTTAAACTGGCATGATACGTTAGATAATTTGTATACGCTAGTGCATGAATTTGGTCACAGTGTCCAC
AGTTATTTAACACGTAACAATCAACCAGCTGTCTACGGAGACTATACTATCTTCTTAGCAGAAATAGCATCAACGACTAA
TGAAAATTTATTGACGGATTATTTACTGAAAACATATGAAGATGAAAAAATCCAAGCGTATATCATTAATCATTTCTTAG
ATGGCTTTAAAGGGACTGTTTTCCGTCAAACGCAGTTCGCTGAATTTGAGCATGAGATACATCTTGCTGATCAAGCTGGC
AAGGCGTTAACGGCTGAGTTTTTAACGGAATTATACTATGGTATTAATAAAAAGTATTACGGTGATACACTGGTACACGA
TGAAGAGATTGGTTATGAGTGGGCACGAATTCCTCATTTCTATTACAATTATTATGTGTACCAATATGCCACTGGTTTTT
CAGCAGCGTCGGCCTTAGCGCAACATATTTTAACCGAAGGCGAACCAGCCGTGGCCCGCTATTTGACTTTCTTAAAGGCA
GGTAACTCTGATTATCCGATTGATGTATTGAAAGCAGCTGGTGTTGATATGACGACAGCTAAACCGATTGAAGATGCCTT
AAAGGTATTTGAGACGCGCTTAAGTGAGTTTGAAGAAATTATGGCGAAGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-588)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

98.344

0.507

Multiple sequence alignment