Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACJGE4_RS17875 Genome accession   NZ_CP174519
Coordinates   3576394..3577779 (-) Length   461 a.a.
NCBI ID   WP_099320008.1    Uniprot ID   -
Organism   Bacillus velezensis strain JD-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3571394..3582779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGE4_RS17840 (ACJGE4_17840) flgL 3571569..3572486 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ACJGE4_RS17845 (ACJGE4_17845) flgK 3572498..3574015 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  ACJGE4_RS17850 (ACJGE4_17850) - 3574031..3574513 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACJGE4_RS17855 (ACJGE4_17855) flgM 3574528..3574794 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJGE4_RS17860 (ACJGE4_17860) - 3574864..3575283 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ACJGE4_RS17865 (ACJGE4_17865) comFC 3575357..3576046 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  ACJGE4_RS17870 (ACJGE4_17870) - 3576052..3576336 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  ACJGE4_RS17875 (ACJGE4_17875) comFA 3576394..3577779 (-) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  ACJGE4_RS17880 (ACJGE4_17880) - 3577888..3578736 (-) 849 WP_094031329.1 DegV family protein -
  ACJGE4_RS17885 (ACJGE4_17885) degU 3578834..3579523 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACJGE4_RS17890 (ACJGE4_17890) degS 3579600..3580763 (-) 1164 WP_407966260.1 two-component sensor histidine kinase DegS Regulator
  ACJGE4_RS17895 (ACJGE4_17895) - 3580986..3581633 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52775.27 Da        Isoelectric Point: 10.1560

>NTDB_id=1077750 ACJGE4_RS17875 WP_099320008.1 3576394..3577779(-) (comFA) [Bacillus velezensis strain JD-3]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAYENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVYAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1077750 ACJGE4_RS17875 WP_099320008.1 3576394..3577779(-) (comFA) [Bacillus velezensis strain JD-3]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAGGCCTATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTTATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(329-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623
  comFA Latilactobacillus sakei subsp. sakei 23K

39.713

90.672

0.36

Multiple sequence alignment