Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACJED4_RS07125 Genome accession   NZ_CP174518
Coordinates   1437249..1437890 (+) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G03     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1432249..1442890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS07100 - 1432569..1432922 (-) 354 WP_017358939.1 hypothetical protein -
  ACJED4_RS07105 degQ 1433428..1433568 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  ACJED4_RS07110 - 1433720..1434634 (+) 915 WP_108611759.1 polyprenyl synthetase family protein -
  ACJED4_RS07115 comX 1434631..1434798 (+) 168 WP_108611760.1 competence pheromone ComX -
  ACJED4_RS07120 comP 1434856..1437168 (+) 2313 WP_109718413.1 ATP-binding protein Regulator
  ACJED4_RS07125 comA 1437249..1437890 (+) 642 WP_007500477.1 response regulator transcription factor Regulator
  ACJED4_RS07130 - 1437914..1438303 (+) 390 WP_008345855.1 hotdog fold thioesterase -
  ACJED4_RS07135 mnhG 1438394..1438768 (-) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  ACJED4_RS07140 - 1438752..1439033 (-) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  ACJED4_RS07145 - 1439033..1439512 (-) 480 WP_017358944.1 Na+/H+ antiporter subunit E -
  ACJED4_RS07150 - 1439519..1440997 (-) 1479 WP_265786131.1 Na+/H+ antiporter subunit D -
  ACJED4_RS07155 - 1440990..1441331 (-) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  ACJED4_RS07160 - 1441331..1441762 (-) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=1077643 ACJED4_RS07125 WP_007500477.1 1437249..1437890(+) (comA) [Bacillus altitudinis strain G03]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1077643 ACJED4_RS07125 WP_007500477.1 1437249..1437890(+) (comA) [Bacillus altitudinis strain G03]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATCCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTTTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment