Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   LRH_RS07520 Genome accession   NZ_CP174514
Coordinates   1588400..1589641 (-) Length   413 a.a.
NCBI ID   WP_005684320.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus HN001     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583400..1594641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRH_RS07515 (LRH_07515) - 1586646..1588376 (-) 1731 WP_005684319.1 proline--tRNA ligase -
  LRH_RS07520 (LRH_07520) eeP 1588400..1589641 (-) 1242 WP_005684320.1 RIP metalloprotease RseP Regulator
  LRH_RS07525 (LRH_07525) - 1589658..1590446 (-) 789 WP_005684321.1 phosphatidate cytidylyltransferase -
  LRH_RS07530 (LRH_07530) - 1590482..1591234 (-) 753 WP_005684322.1 isoprenyl transferase -
  LRH_RS07535 (LRH_07535) frr 1591604..1592161 (-) 558 WP_005684323.1 ribosome recycling factor -
  LRH_RS07540 (LRH_07540) pyrH 1592161..1592880 (-) 720 WP_005684324.1 UMP kinase -
  LRH_RS07545 (LRH_07545) tsf 1593248..1594129 (-) 882 WP_005684325.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45253.82 Da        Isoelectric Point: 7.4658

>NTDB_id=1077580 LRH_RS07520 WP_005684320.1 1588400..1589641(-) (eeP) [Lacticaseibacillus rhamnosus HN001]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSIILNDAGTVTRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDEEKLERWSVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLIVNFAGPMNNFILAILTFIIYGLMFGVQVLNTNQIGTVLPGYPAAQAGLKSNATIQAIDGEKIHSFTDL
SSKVSKQAGKSVTFTVKEHGKTQNVVIKPNKDGKIGVEALIEKSPARAFTYGFTQTWDLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGLQGLLFFMGYLSLGLGISNLLPIPVLDGGKILLNLIELIRRKPLKPETEGVVTMVGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1077580 LRH_RS07520 WP_005684320.1 1588400..1589641(-) (eeP) [Lacticaseibacillus rhamnosus HN001]
ATGACCACAATCATTGCCTTTATTGTTATCTTCTGCATTCTTGTGGTGGTTCACGAGTTTGGCCATTTTTATTTTGCCAA
GCGCAGCGGAATATTAGTACGTGAGTTTTCGATTGGCATGGGGCCTAAGCTATGGGCCTCACATAAGAATAATACGACCT
ATACCTTGCGCTTGTTGCCACTGGGCGGATATGTACGTATGGCTGGCTGGCAGGATGAGGAAGATGAAATCAAGCCTGGG
ACCATGCTGAGTATTATCCTGAATGATGCCGGTACAGTGACGCGGATTAATGCCAGTGATAAAACAACGCTGGCAGGTGG
CATGCCGGTACAAGTAAGCCGCGTAGACCTCGTTAAAGACTTGGTGATTGAAGGCTACCCTAATGGCGACGAAGAGAAAC
TGGAGCGTTGGTCGGTTGACCATGATGCCACGATTATTGAAGAAGATGGCACCGAAGTTCAAATTGCGCCAGAAGATGTC
CAATTTCAAAATGCCCCGGTTTGGCGGCGTCTAATTGTTAACTTTGCCGGTCCGATGAATAATTTTATTCTTGCCATTTT
GACCTTTATTATTTACGGGTTGATGTTTGGCGTGCAGGTCTTAAATACCAATCAAATCGGAACGGTACTGCCCGGTTATC
CTGCTGCTCAAGCCGGGCTTAAGTCAAATGCCACAATTCAGGCGATTGATGGTGAAAAGATTCATTCTTTTACTGATCTT
TCCAGCAAAGTCAGCAAACAGGCCGGTAAGTCGGTGACGTTTACAGTTAAAGAGCATGGCAAAACGCAAAATGTGGTCAT
CAAGCCTAACAAGGATGGCAAGATCGGTGTGGAAGCACTCATCGAAAAATCACCGGCACGGGCGTTTACGTATGGTTTCA
CCCAAACCTGGGATTTAGCTGTGCGCACTTGGGATGTCCTCAAATCCATGGTGACTGGCGGCTTTTCGCTTAATAAGTTA
GCTGGGCCGGTCGGAATTTATACCATGACCAGTCAAAGTGCTAAAGGTGGATTGCAGGGATTGCTATTCTTTATGGGATA
CTTAAGTCTCGGCTTGGGAATCAGCAATTTGTTGCCAATCCCGGTTCTGGATGGTGGTAAAATTTTACTGAATCTCATTG
AACTGATTCGGCGCAAACCGTTGAAGCCTGAAACAGAAGGTGTTGTCACCATGGTTGGCCTCGGGTTGATGGTACTCCTG
ATGCTCGCCGTGACGATTAATGATATTATGCGTTACTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.821

100

0.501
  eeP Streptococcus thermophilus LMD-9

48.585

100

0.499

Multiple sequence alignment