Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJM129_RS05620 Genome accession   NZ_CP007749
Coordinates   1077808..1078359 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni M129     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1072808..1083359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM129_RS05580 (CJM129_5365) - 1072998..1073423 (+) 426 WP_002869469.1 GNAT family N-acetyltransferase -
  CJM129_RS09825 - 1073487..1074107 (+) 621 Protein_1085 NAD(P)H-dependent oxidoreductase -
  CJM129_RS05595 (CJM129_5370) - 1074107..1074712 (+) 606 WP_002869471.1 NAD(P)H-dependent oxidoreductase -
  CJM129_RS05600 (CJM129_5375) pgsA 1074837..1075373 (+) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJM129_RS05605 (CJM129_5380) rseP 1075370..1076476 (+) 1107 WP_002869473.1 RIP metalloprotease RseP -
  CJM129_RS05610 (CJM129_5385) - 1076469..1077335 (+) 867 WP_071306798.1 VirK family antimicrobial peptide resistance protein -
  CJM129_RS05615 (CJM129_5390) rpsF 1077422..1077799 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  CJM129_RS05620 (CJM129_5395) ssb 1077808..1078359 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  CJM129_RS05625 (CJM129_5400) rpsR 1078370..1078630 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJM129_RS05630 (CJM129_5405) lon 1078690..1081065 (-) 2376 WP_071306799.1 endopeptidase La -
  CJM129_RS05635 (CJM129_5410) - 1081082..1081729 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  CJM129_RS05640 (CJM129_5415) fliW 1081890..1082279 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJM129_RS05645 (CJM129_5420) proC 1082279..1083010 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  CJM129_RS05650 (CJM129_5425) ctsT 1083007..1083309 (+) 303 WP_002875928.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=107739 CJM129_RS05620 WP_002853013.1 1077808..1078359(+) (ssb) [Campylobacter jejuni subsp. jejuni M129]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=107739 CJM129_RS05620 WP_002853013.1 1077808..1078359(+) (ssb) [Campylobacter jejuni subsp. jejuni M129]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment