Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACJJVB_RS05020 Genome accession   NZ_CP174502
Coordinates   1084015..1085352 (-) Length   445 a.a.
NCBI ID   WP_407733130.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain ISHS.CFo     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079015..1090352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJVB_RS04990 (ACJJVB_04990) - 1079583..1080155 (-) 573 WP_058488531.1 PilX N-terminal domain-containing pilus assembly protein -
  ACJJVB_RS04995 (ACJJVB_04995) - 1080152..1080898 (-) 747 WP_407733127.1 PilW family protein -
  ACJJVB_RS05000 (ACJJVB_05000) pilV 1080910..1081482 (-) 573 WP_160329401.1 type IV pilus modification protein PilV -
  ACJJVB_RS05005 (ACJJVB_05005) - 1081491..1081967 (-) 477 WP_407733128.1 GspH/FimT family pseudopilin -
  ACJJVB_RS05010 (ACJJVB_05010) - 1082117..1082629 (-) 513 WP_407733129.1 GspH/FimT family protein -
  ACJJVB_RS05015 (ACJJVB_05015) thiO 1082808..1083917 (+) 1110 WP_058071494.1 glycine oxidase ThiO -
  ACJJVB_RS05020 (ACJJVB_05020) pilR 1084015..1085352 (-) 1338 WP_407733130.1 sigma-54-dependent transcriptional regulator Regulator
  ACJJVB_RS05025 (ACJJVB_05025) pilS 1085364..1086953 (-) 1590 WP_043273654.1 PAS domain-containing sensor histidine kinase Regulator
  ACJJVB_RS05030 (ACJJVB_05030) - 1086946..1087176 (-) 231 WP_009617584.1 PP0621 family protein -
  ACJJVB_RS05035 (ACJJVB_05035) - 1087315..1088328 (-) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  ACJJVB_RS05040 (ACJJVB_05040) rluD 1088475..1089434 (+) 960 WP_407733131.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACJJVB_RS05045 (ACJJVB_05045) pgeF 1089431..1090159 (+) 729 WP_407733132.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49568.83 Da        Isoelectric Point: 5.6352

>NTDB_id=1077389 ACJJVB_RS05020 WP_407733130.1 1084015..1085352(-) (pilR) [Pseudomonas citronellolis strain ISHS.CFo]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLASDSGLAAAQVSPEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPQDLRFAEATGGSESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1077389 ACJJVB_RS05020 WP_407733130.1 1084015..1085352(-) (pilR) [Pseudomonas citronellolis strain ISHS.CFo]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCAAGGAATACCTGGCCCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGCGCGGAAGACGCGCCGGTGGACAACC
GCCTGCTGGGCGACTCGCCACCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAACAGGGCCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTGAACTGCGGCGCCATCCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAAGGTAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAATGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCC
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCAGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTGCGCGTGCTCTGCGCCACCCACAAGGACCTGGCCGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGCTGCTCACCGAGCGCGTG
CTCAAGCGCCTGGCCAGCGACAGCGGCCTGGCCGCGGCGCAGGTCAGCCCCGAAGCCCTGGAAAAGCTCAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAGGACGATGTCATCCAGCCCC
AGGACCTGCGTTTCGCCGAGGCCACGGGCGGCAGTGAAAGCGGTGAGGCCAGCCTGGCGCAAATCGACAATCTCGAGGAT
TACCTCGAAGAGATCGAACGCAAGCTGATCATGCAGGCGCTGGAAGAAACCCGCTGGAATCGTACCGCCGCGGCCCAGCG
GCTGGGGCTGACGTTCCGTTCGATGCGCTATCGCTTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.989

100

0.89
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515

Multiple sequence alignment