Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACJD0W_RS18590 Genome accession   NZ_CP174457
Coordinates   757916..759097 (-) Length   393 a.a.
NCBI ID   WP_407833943.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain BD182406     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 752916..764097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS18575 - 753616..754740 (-) 1125 WP_045458627.1 fatty acid desaturase -
  ACJD0W_RS18580 - 755032..755580 (+) 549 WP_010452170.1 GNAT family N-acetyltransferase -
  ACJD0W_RS18585 cqsS 755824..757869 (+) 2046 WP_407834053.1 response regulator Regulator
  ACJD0W_RS18590 cqsA 757916..759097 (-) 1182 WP_407833943.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACJD0W_RS18595 ylqF 759394..760338 (-) 945 WP_407833944.1 ribosome biogenesis GTPase YlqF -
  ACJD0W_RS18600 - 760630..761355 (+) 726 WP_071234395.1 nitroreductase family protein -
  ACJD0W_RS18605 - 761607..762587 (+) 981 WP_010452160.1 chemotaxis protein -
  ACJD0W_RS18610 - 763051..763773 (+) 723 WP_071234396.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43364.44 Da        Isoelectric Point: 6.1850

>NTDB_id=1077145 ACJD0W_RS18590 WP_407833943.1 757916..759097(-) (cqsA) [Vibrio rotiferianus strain BD182406]
MSDKAKIKPLPSFVEERLDFYIHDLIAKNQNKKHLVLGKRPTDSSVVMQSNDYLSLSSNRQIQADHQHAISEDDDNVVMS
AIFLQDEQSKPKFEQQLADFTGMESCLLSQSGWAANVGLLQTICAPQTPVYIDFFAHMSLWEGARIAGAEIHPFMHNNMS
HLQKQIKRHGEGIIIVDSIYSTIGTIAPLETIYEIASESNCALIVDESHSLGTHGPAGAGLVKALGLTSKVDFITVSLAK
TFAYRAGAILGPQKLSQSLPFVAYPAIFSSTILPQEVVRLESTLNVIKSADDKRKALFARSSSLRTGLKQIGFQIRSESQ
IIALECGSEENTEKVRDFLEEHDVFGAVFCRPATGKNKNIIRFSINADITTAQVEHVLAVCEKAFNNPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1077145 ACJD0W_RS18590 WP_407833943.1 757916..759097(-) (cqsA) [Vibrio rotiferianus strain BD182406]
ATGAGTGACAAAGCTAAAATAAAACCACTTCCTTCCTTTGTTGAGGAGCGTCTGGACTTTTACATCCATGATTTAATAGC
AAAAAATCAAAACAAAAAACACCTTGTACTAGGAAAACGCCCAACGGATAGTTCAGTGGTGATGCAAAGTAACGACTACC
TATCCTTATCAAGCAACCGACAGATTCAAGCTGACCACCAGCACGCTATATCAGAAGATGATGATAACGTCGTAATGTCG
GCAATTTTTTTACAAGATGAACAATCTAAGCCTAAATTTGAACAGCAACTTGCTGATTTTACGGGAATGGAAAGTTGTTT
ATTGTCCCAATCAGGTTGGGCTGCAAATGTTGGCTTATTACAAACGATATGTGCACCACAAACTCCTGTCTATATCGACT
TCTTCGCCCACATGTCATTGTGGGAGGGAGCTCGTATCGCTGGAGCTGAAATTCACCCGTTCATGCACAACAACATGAGC
CACCTTCAAAAGCAAATCAAGCGACACGGTGAGGGCATTATTATCGTTGATTCTATTTACAGCACTATTGGAACCATAGC
GCCCCTCGAAACAATCTACGAAATTGCTTCTGAATCAAACTGCGCTCTTATCGTCGATGAGTCACATTCATTAGGTACAC
ATGGCCCTGCAGGAGCCGGGCTAGTAAAAGCACTTGGTTTAACGAGTAAAGTAGATTTTATTACGGTTAGCTTAGCCAAA
ACATTTGCTTATCGGGCAGGCGCAATCTTGGGCCCGCAAAAGCTATCTCAATCGCTCCCGTTTGTTGCGTATCCTGCTAT
TTTTAGCTCAACAATTCTTCCTCAAGAAGTTGTCCGCTTGGAATCTACGCTGAACGTTATTAAAAGTGCGGATGACAAAC
GAAAAGCTTTGTTTGCTCGTTCATCATCTTTAAGAACCGGACTAAAGCAGATTGGATTTCAGATTCGTAGTGAATCACAG
ATCATTGCTTTGGAATGTGGAAGCGAAGAGAACACGGAAAAAGTGAGGGACTTTCTAGAGGAACATGATGTATTTGGAGC
CGTTTTCTGTCGACCAGCTACAGGAAAAAACAAGAATATCATTCGTTTTTCTATCAACGCTGATATCACAACAGCTCAAG
TCGAACACGTATTGGCCGTGTGCGAAAAGGCTTTCAATAACCCTGAATTAGAATTTGTCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(48-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.29

98.219

0.573

Multiple sequence alignment