Detailed information NTG1077130

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJD0W_RS12550
• Genome accession: NZ_CP174456
• Coordinates: 2770643..2771629 (-)
• Length: 328 a.a.
• NCBI ID: WP_010450244.1
• Uniprot ID: A0A2K7SP11
• Organism: Vibrio rotiferianus strain BD182406
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2765643..2776629

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJD0W_RS12535	recA	2766181..2767224 (-)	1044	WP_010450238.1	recombinase RecA	Machinery gene
ACJD0W_RS12540	pncC	2767425..2767907 (-)	483	WP_010450240.1	nicotinamide-nucleotide amidase	-
ACJD0W_RS12545	mutS	2767993..2770554 (+)	2562	WP_010450242.1	DNA mismatch repair protein MutS	-
ACJD0W_RS12550	rpoS	2770643..2771629 (-)	987	WP_010450244.1	RNA polymerase sigma factor RpoS	Regulator
ACJD0W_RS12555	nlpD	2771710..2772621 (-)	912	WP_038885718.1	murein hydrolase activator NlpD	-
ACJD0W_RS12560	-	2772636..2773262 (-)	627	WP_010450248.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACJD0W_RS12565	surE	2773262..2774038 (-)	777	WP_407832472.1	5'/3'-nucleotidase SurE	-
ACJD0W_RS12570	truD	2774038..2775081 (-)	1044	WP_282066964.1	tRNA pseudouridine(13) synthase TruD	-
ACJD0W_RS12575	ispF	2775127..2775603 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACJD0W_RS12580	ispD	2775618..2776328 (-)	711	WP_407832473.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACJD0W_RS12585	ftsB	2776330..2776611 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37560.57 Da
• Isoelectric Point: 4.8400

>NTDB_id=1077130 ACJD0W_RS12550 WP_010450244.1 2770643..2771629(-) (rpoS) [Vibrio rotiferianus strain BD182406]
MSISNTVTKVEEFDYDDAAVGRINNELVKSPSKKEKSSQREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1077130 ACJD0W_RS12550 WP_010450244.1 2770643..2771629(-) (rpoS) [Vibrio rotiferianus strain BD182406]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTATGACGATGCAGCAGTAGGCCGCATTAATAACGAACT
TGTAAAATCACCATCCAAAAAAGAGAAGAGCTCGCAAAGAGAGGAATTCGATGCGAGTAATAAGAGCTTAGATGCAACAC
AGCTTTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACAGCAGAAGAAGAAGTACTTTATGCTCGACGTGCATTGCGT
GGCGATGAAGCTGCTCGTAAACGTATGATCGAAAGTAACTTGCGTCTGGTAGTGAAGATCTCTCGTCGCTACAGCAATCG
TGGTCTTGCACTTCTTGATCTCATCGAAGAAGGCAACCTAGGTTTGATCCGTGCGGTAGAGAAATTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCAACGTGGTGGATCCGCCAAACGATCGAGCGTGCGTTGATGAACCAAACTCGTACCATC
CGTCTGCCGATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACCGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGCTAGATATCCCGGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTA
TTAGTTCTGTTGATACACCAATTGGTGGTGACGGCGAGAAAGCGCTGCTGGATATTATTCCTGATGCCAACAATTCAGAT
CCTGAAGTTTCCACTCAGGACGACGACATTAAATCTTCATTGATCCATTGGTTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTTGCACGTCGGTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAAGTGGAAGGCTTACGTCGACTACGTGAGATCTTGATTAAACAAGGTCTGAACATGGAA
AACTTGTTCAACGTAGAAGATGATTAG

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2K7SP11

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.226	100	0.863