Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACJD0W_RS10135 Genome accession   NZ_CP174456
Coordinates   2229580..2230941 (-) Length   453 a.a.
NCBI ID   WP_045394388.1    Uniprot ID   A0AAW7AAS8
Organism   Vibrio rotiferianus strain BD182406     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2224580..2235941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS10100 moaE 2225180..2225635 (-) 456 WP_010449369.1 molybdopterin synthase catalytic subunit MoaE -
  ACJD0W_RS10105 moaD 2225637..2225894 (-) 258 WP_010449371.1 molybdopterin synthase sulfur carrier subunit -
  ACJD0W_RS10110 moaC 2225894..2226370 (-) 477 WP_005439664.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACJD0W_RS10115 moaB 2226397..2226909 (-) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  ACJD0W_RS10120 moaA 2227010..2227999 (-) 990 WP_282066153.1 GTP 3',8-cyclase MoaA -
  ACJD0W_RS10125 yvcK 2228302..2229192 (+) 891 WP_010449378.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  ACJD0W_RS10130 luxU 2229239..2229583 (-) 345 WP_071234648.1 quorum-sensing phosphorelay protein LuxU -
  ACJD0W_RS10135 luxO 2229580..2230941 (-) 1362 WP_045394388.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACJD0W_RS10140 uvrB 2231337..2233367 (-) 2031 WP_407832329.1 excinuclease ABC subunit UvrB -
  ACJD0W_RS10150 rsxA 2234347..2234925 (+) 579 WP_005425202.1 electron transport complex subunit RsxA -
  ACJD0W_RS10155 rsxB 2234929..2235522 (+) 594 WP_005439677.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50298.34 Da        Isoelectric Point: 5.1393

>NTDB_id=1077121 ACJD0W_RS10135 WP_045394388.1 2229580..2230941(-) (luxO) [Vibrio rotiferianus strain BD182406]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKESNPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
YMSHEEGKSFVRFSPEVIERFNDYEWPGNVRQLQNVLRNIVVLNSGKEISLDMLPPPLNAPMTKTPMPRAVEIESFSASD
IIPLWMTEKSAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNQTEEQKKA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1077121 ACJD0W_RS10135 WP_045394388.1 2229580..2230941(-) (luxO) [Vibrio rotiferianus strain BD182406]
ATGGTCGAAGACACCGCATCCGTCGCAGCGTTATATCGCTCCTATCTAACACCTCTTGGTATTGATATTAATATCGTTGG
CACTGGGCGTGATGCTATTGACAGCTTAAAGCACCGAATCCCAGATTTAATTCTGCTGGATCTGCGTCTACCCGATATGA
CAGGTATGGATGTTCTCCATGCGGTTAAAGAGAGTAACCCAGACGTCCCGATCATTTTTATGACGGCACACGGCTCTATT
GATACGGCCGTAGAGGCAATGCGTCATGGTTCCCAAGATTTTTTAATTAAGCCCTGCGAAGCCGACCGATTGCGTGTCAC
GGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGAATGAAGCTGACAACCCTGGCAATCAAAATTATCAAGGCTTTA
TTGGCAGTAGCCAAACCATGCAGCAGGTTTACCGCACCATTGATTCTGCTGCGAGCAGTAAGGCGAGCATTTTCATTACT
GGTGAAAGTGGCACGGGTAAAGAAGTGTGTGCGGAGGCGATTCACGCAGCAAGTAAGCGTGGAGATAAGCCGTTTATCGC
CATCAACTGTGCAGCAATTCCGAAAGACCTTATTGAAAGTGAACTGTTTGGTCACGTAAAAGGTGCTTTCACCGGTGCGG
CTAATGATCGACAAGGTGCGGCAGAACTGGCTGATGGTGGCACGCTGTTCCTTGATGAGCTGTGTGAAATGGACTTGGAT
CTTCAAACTAAGTTATTGCGTTTTATTCAAACGGGTACGTTCCAAAAGGTCGGTTCTTCTAAAATGAAGAGCGTAGACGT
GCGATTTGTGTGTGCGACCAACCGCGACCCATGGAAAGAGGTTCAAGAAGGCCGTTTCCGTGAAGACCTTTACTATCGTT
TGTACGTAATTCCATTACACCTCCCACCACTACGTGAACGTGGTGAAGATGTAATTGAGATTGCTTATTCATTGCTTGGC
TACATGTCGCATGAAGAAGGGAAGAGCTTTGTACGTTTCTCTCCAGAGGTAATAGAGCGATTCAATGATTACGAATGGCC
TGGAAACGTTCGCCAATTGCAAAACGTGTTACGTAACATTGTTGTCTTGAACAGCGGTAAAGAGATTTCTTTAGACATGT
TACCGCCACCATTGAACGCGCCAATGACTAAGACACCAATGCCAAGAGCCGTTGAAATCGAGAGTTTTTCCGCTTCTGAT
ATTATACCGTTGTGGATGACAGAGAAGTCCGCCATTGAACAGGCTATAGAGGCTTGCGATGGCAATATACCGAGAGCTGC
TGGGTATTTGGATGTAAGCCCTTCAACGATTTATCGTAAGCTCCAAACTTGGAATCAAACCGAAGAGCAGAAAAAGGCAT
GA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.723

98.896

0.868
  pilR Pseudomonas aeruginosa PAK

37.303

98.234

0.366

Multiple sequence alignment