Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACI3ES_RS02285 Genome accession   NZ_CP174386
Coordinates   452787..454577 (+) Length   596 a.a.
NCBI ID   WP_114666389.1    Uniprot ID   A0A9X3E7Z7
Organism   Leuconostoc falkenbergense strain SAEED 24451     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 447787..459577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3ES_RS02265 - 447970..449412 (+) 1443 WP_114666385.1 ABC transporter substrate-binding protein/permease -
  ACI3ES_RS02270 - 449409..450155 (+) 747 WP_114666386.1 amino acid ABC transporter ATP-binding protein -
  ACI3ES_RS02275 - 450210..451661 (+) 1452 WP_114666387.1 ABC transporter substrate-binding protein/permease -
  ACI3ES_RS02280 - 451708..452709 (+) 1002 WP_114666388.1 competence protein CoiA -
  ACI3ES_RS02285 pepF 452787..454577 (+) 1791 WP_114666389.1 oligoendopeptidase F Regulator
  ACI3ES_RS02290 - 454635..455027 (+) 393 WP_004915808.1 cytidine deaminase -
  ACI3ES_RS02295 - 455039..455479 (+) 441 WP_004915811.1 nucleoside 2-deoxyribosyltransferase -
  ACI3ES_RS02300 - 455479..456408 (+) 930 WP_114666390.1 phosphoglycerate dehydrogenase -
  ACI3ES_RS02305 - 456472..456840 (+) 369 WP_114666391.1 helix-turn-helix domain-containing protein -
  ACI3ES_RS02310 pheS 457096..458145 (+) 1050 WP_114666392.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 66892.36 Da        Isoelectric Point: 4.4434

>NTDB_id=1077016 ACI3ES_RS02285 WP_114666389.1 452787..454577(+) (pepF) [Leuconostoc falkenbergense strain SAEED 24451]
MAQQILRSEVPENLTWDLSTIFESDDAFEAAFKSVQTAAKQLSQYVGHVGDSATTLLAALEADLAAEREFEKVYVYAHQI
FDQDTTNPKYAAYNAQVQSLYAELSAATSFFQPEVLAIPDATLTQYLAAEGLAKYQHFFDVLLAQKPHTLPADQEALLAG
ASDIFGASEQTFGALDNSDITFGNVHTETGEVVPLTNGLYSLLLESQNRDLRQEAFTTLYDSYIGLQNTFASTLSAHVKG
HNFLAKTRHYDSARQAAVSGNNIPESVFQTLTTTVDENLPLLHRFVALRKKILGVEDVHSYDLYVPLVDEIDFDVTYEKA
QQIVLSALAPLGADYVAIVQKAFDERWIDVVENKGKRTGAYSSGAYDTKPFILLNWQNNLNNVYTLAHEMGHSVHSYLTR
HNQEYHYGDYPIFLAEIASTTNEGLLTDYLLKTNSDPKFRAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSADGTALTA
EVMSDYYGELNQKFYGPDLFPDEAIAYEWSRIPHFYYNFYVYQYATGEAAATTLAERILNGNGAQDYKNYLKSGNSDYAL
NIIQKAGVDMSQSGYLKQAFEVFEARLSELETLLSK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=1077016 ACI3ES_RS02285 WP_114666389.1 452787..454577(+) (pepF) [Leuconostoc falkenbergense strain SAEED 24451]
ATGGCACAACAAATACTACGTTCTGAAGTTCCTGAAAATTTAACATGGGATCTCAGCACAATTTTTGAATCAGATGATGC
ATTTGAAGCGGCCTTTAAGTCAGTTCAAACAGCAGCAAAACAATTAAGTCAATATGTTGGGCACGTTGGTGATTCAGCTA
CTACATTGCTGGCTGCATTAGAAGCGGACCTTGCAGCTGAACGCGAATTTGAAAAAGTGTATGTCTATGCACACCAGATT
TTTGATCAAGACACTACTAATCCTAAATATGCGGCTTATAATGCACAAGTTCAGAGTTTATATGCTGAGTTGAGCGCAGC
AACGTCGTTTTTTCAACCAGAAGTCTTAGCTATTCCTGATGCGACTTTGACTCAATATCTTGCTGCAGAAGGATTGGCAA
AGTATCAACATTTCTTTGATGTTTTACTTGCTCAAAAGCCTCATACATTGCCCGCTGATCAAGAAGCGCTCTTAGCAGGT
GCGAGTGACATTTTTGGTGCATCCGAGCAAACTTTTGGTGCGCTTGACAATTCCGATATTACATTTGGTAATGTTCATAC
TGAGACCGGAGAAGTAGTGCCATTAACAAATGGTTTATATTCACTCTTGTTAGAATCTCAAAACCGTGATTTGCGCCAAG
AAGCTTTTACAACCCTATATGATAGTTACATTGGATTACAAAACACATTTGCGTCAACACTATCTGCTCACGTTAAGGGA
CACAATTTTTTGGCCAAAACTCGACACTATGATTCAGCGCGCCAAGCTGCTGTTTCAGGAAATAATATCCCTGAAAGTGT
TTTTCAAACATTAACGACAACTGTGGATGAAAACTTACCATTATTGCATCGATTTGTTGCTTTACGAAAAAAAATTCTGG
GTGTAGAAGATGTGCATTCTTATGACTTGTACGTGCCATTGGTTGATGAAATTGACTTTGATGTAACCTATGAAAAGGCC
CAACAAATTGTCTTATCAGCATTGGCGCCGTTAGGGGCAGATTATGTTGCCATTGTTCAAAAAGCGTTTGACGAACGATG
GATTGATGTTGTCGAAAATAAAGGTAAACGTACTGGTGCTTATTCAAGTGGTGCTTACGACACTAAGCCATTCATTCTGT
TGAATTGGCAAAATAATTTGAATAATGTCTACACTTTGGCGCATGAAATGGGACATTCCGTTCATTCTTATTTAACACGG
CATAACCAAGAGTACCATTATGGTGATTATCCTATCTTTTTGGCAGAAATCGCCTCAACAACTAATGAAGGGTTGTTGAC
GGACTATTTGCTTAAGACCAATAGTGATCCTAAATTCCGTGCTTATGTTTTGAACCAATACTTAGATGGCTTCAAGGGAA
CGGTATTTCGTCAAACTCAGTTTGCGGAATTTGAACAGTGGATCCACGAACAAAGTGCTGATGGAACGGCTTTAACTGCT
GAAGTCATGAGTGATTATTATGGTGAGTTGAATCAAAAGTTCTATGGACCAGATCTTTTCCCTGATGAAGCTATTGCTTA
TGAATGGTCTCGCATTCCTCACTTTTATTATAATTTCTATGTTTATCAGTATGCTACTGGTGAAGCTGCCGCAACAACTT
TGGCAGAACGTATCTTGAATGGCAACGGTGCTCAAGACTATAAAAATTATTTAAAGTCGGGTAATTCAGATTATGCGTTG
AATATTATTCAAAAAGCAGGCGTCGACATGAGTCAATCTGGCTATTTAAAACAAGCCTTTGAAGTGTTTGAAGCACGTTT
GTCTGAATTAGAAACATTGCTATCCAAGTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-581)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.602

99.497

0.513

Multiple sequence alignment