Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACIU4M_RS05490 Genome accession   NZ_CP174375
Coordinates   982271..982912 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 977271..987912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS05455 (ACIU4M_05455) - 978399..978830 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  ACIU4M_RS05460 (ACIU4M_05460) - 978830..979171 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  ACIU4M_RS05465 (ACIU4M_05465) - 979164..980642 (+) 1479 WP_058336867.1 Na+/H+ antiporter subunit D -
  ACIU4M_RS05470 (ACIU4M_05470) - 980649..981128 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  ACIU4M_RS05475 (ACIU4M_05475) - 981128..981409 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  ACIU4M_RS05480 (ACIU4M_05480) mnhG 981393..981767 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  ACIU4M_RS05485 (ACIU4M_05485) - 981858..982247 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  ACIU4M_RS05490 (ACIU4M_05490) comA 982271..982912 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  ACIU4M_RS05495 (ACIU4M_05495) comP 982993..985284 (-) 2292 WP_135009734.1 ATP-binding protein Regulator
  ACIU4M_RS05500 (ACIU4M_05500) comX 985298..985471 (-) 174 WP_135009732.1 competence pheromone ComX -
  ACIU4M_RS05505 (ACIU4M_05505) - 985449..986372 (-) 924 WP_135009731.1 polyprenyl synthetase family protein -
  ACIU4M_RS05510 (ACIU4M_05510) degQ 986524..986664 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  ACIU4M_RS05515 (ACIU4M_05515) - 987170..987523 (+) 354 WP_017367963.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=1076962 ACIU4M_RS05490 WP_007500477.1 982271..982912(-) (comA) [Bacillus altitudinis strain SF5]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1076962 ACIU4M_RS05490 WP_007500477.1 982271..982912(-) (comA) [Bacillus altitudinis strain SF5]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTTCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment