Detailed information NTG1076918

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: ACH36K_RS11320
• Genome accession: NZ_CP174370
• Coordinates: 2429882..2430592 (-)
• Length: 236 a.a.
• NCBI ID: WP_411167735.1
• Uniprot ID: -
• Organism: Clostridium sp. MB05
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 2424882..2435592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACH36K_RS11280 (ACH36K_11280)	-	2425010..2425528 (-)	519	WP_411167728.1	ECF transporter S component	-
ACH36K_RS11285 (ACH36K_11285)	-	2425692..2425883 (-)	192	WP_411167729.1	hypothetical protein	-
ACH36K_RS11290 (ACH36K_11290)	-	2426043..2426432 (+)	390	WP_411167730.1	PadR family transcriptional regulator	-
ACH36K_RS11295 (ACH36K_11295)	-	2426777..2426974 (-)	198	WP_322379306.1	hypothetical protein	-
ACH36K_RS11300 (ACH36K_11300)	-	2427053..2427574 (-)	522	WP_411167731.1	hypothetical protein	-
ACH36K_RS11305 (ACH36K_11305)	-	2427589..2427771 (-)	183	WP_411167732.1	hypothetical protein	-
ACH36K_RS11310 (ACH36K_11310)	-	2427803..2428384 (-)	582	WP_411167733.1	hypothetical protein	-
ACH36K_RS11315 (ACH36K_11315)	-	2428497..2429876 (-)	1380	WP_411167734.1	sensor histidine kinase	-
ACH36K_RS11320 (ACH36K_11320)	scnR	2429882..2430592 (-)	711	WP_411167735.1	response regulator transcription factor	Regulator
ACH36K_RS11325 (ACH36K_11325)	-	2430766..2431773 (+)	1008	WP_411167736.1	alpha/beta fold hydrolase	-
ACH36K_RS11330 (ACH36K_11330)	-	2431967..2432608 (-)	642	WP_411167737.1	hypothetical protein	-
ACH36K_RS11335 (ACH36K_11335)	-	2432703..2433119 (-)	417	WP_411167738.1	hypothetical protein	-
ACH36K_RS11340 (ACH36K_11340)	-	2433436..2433615 (-)	180	WP_411167739.1	Spo0E family sporulation regulatory protein-aspartic acid phosphatase	-
ACH36K_RS11345 (ACH36K_11345)	-	2433865..2434320 (-)	456	WP_411167740.1	hypothetical protein	-
ACH36K_RS11350 (ACH36K_11350)	-	2434405..2434634 (-)	230	Protein_2169	IS1595 family transposase	-

Sequence

Protein

• Length: 236 a.a.
• Molecular weight: 26982.30 Da
• Isoelectric Point: 5.2400

>NTDB_id=1076918 ACH36K_RS11320 WP_411167735.1 2429882..2430592(-) (scnR) [Clostridium sp. MB05]
MYSIKKKKILIVDDEPQLLEMLETIFKKDGFNDIYTAKSCEEAMNKLINNNPDIAILDVMLPDGDGFSLFNEFKKYCEIP
VLFLTARGEAEDKLLGLGLGADDYIVKPFLPRELTLRLNAILKRTYSKNLKEELPIIYLNSSTIDLGKAEVVKDNEKFYL
TAKEHAILTVLYENANKIVTSNVLCEKAWEDDSYGYENTLMVHIRHIREKIEENPSKPKALITVKGLGYSLIINNR

Nucleotide

• Length: 711 bp

>NTDB_id=1076918 ACH36K_RS11320 WP_411167735.1 2429882..2430592(-) (scnR) [Clostridium sp. MB05]
ATGTATTCAATTAAGAAAAAAAAGATATTAATTGTAGATGATGAGCCTCAATTGTTAGAAATGCTAGAAACCATATTTAA
AAAAGATGGTTTTAATGATATATATACAGCTAAGTCTTGTGAAGAAGCAATGAATAAATTAATTAATAATAATCCTGATA
TTGCAATTCTTGATGTTATGTTGCCAGATGGAGATGGATTTTCACTTTTTAATGAATTTAAGAAGTACTGTGAAATACCA
GTATTATTCCTTACTGCAAGAGGAGAAGCAGAGGACAAGCTTTTAGGCTTAGGACTTGGAGCTGATGATTATATAGTAAA
GCCATTTTTACCAAGAGAACTTACTTTAAGGTTAAATGCAATATTAAAAAGAACATATTCTAAGAATTTAAAAGAAGAAT
TGCCAATTATATATCTTAATTCATCAACGATTGATTTAGGAAAAGCTGAAGTAGTAAAAGATAATGAAAAGTTTTATTTA
ACTGCTAAGGAGCACGCTATTTTAACTGTTTTATATGAAAATGCAAATAAAATAGTAACTAGTAATGTGCTTTGTGAAAA
GGCTTGGGAAGATGATTCATATGGTTATGAAAATACACTGATGGTACATATAAGGCATATTCGTGAAAAGATAGAAGAAA
ATCCTTCTAAACCTAAAGCTCTTATTACAGTTAAAGGCCTTGGATACAGCTTAATAATAAATAACAGGTGA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-231)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	49.565	97.458	0.483
vicR	Streptococcus mutans UA159	36.596	99.576	0.364