Detailed information NTG1076419

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACJEHT_RS01960
• Genome accession: NZ_CP174243
• Coordinates: 449444..450307 (+)
• Length: 287 a.a.
• NCBI ID: WP_011215548.1
• Uniprot ID: Q5WWF1
• Organism: Legionella pneumophila strain SPF582
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 444444..455307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJEHT_RS01940 (ACJEHT_01940)	-	444937..445263 (-)	327	WP_011213802.1	DUF1820 family protein	-
ACJEHT_RS01945 (ACJEHT_01945)	-	445446..446189 (-)	744	WP_011215551.1	methyltransferase domain-containing protein	-
ACJEHT_RS01950 (ACJEHT_01950)	pilB	446448..448172 (+)	1725	WP_011215550.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACJEHT_RS01955 (ACJEHT_01955)	pilC	448178..449398 (+)	1221	WP_011215549.1	type II secretion system F family protein	Machinery gene
ACJEHT_RS01960 (ACJEHT_01960)	pilD	449444..450307 (+)	864	WP_011215548.1	A24 family peptidase	Machinery gene
ACJEHT_RS01965 (ACJEHT_01965)	-	450321..451526 (-)	1206	WP_011215547.1	cyclic nucleotide-binding domain-containing protein	-
ACJEHT_RS01970 (ACJEHT_01970)	-	451634..452227 (-)	594	WP_011213808.1	hypothetical protein	-
ACJEHT_RS01975 (ACJEHT_01975)	-	452243..452698 (-)	456	WP_011215546.1	hypothetical protein	-
ACJEHT_RS01980 (ACJEHT_01980)	-	452832..453647 (+)	816	WP_011215545.1	pyruvate, water dikinase regulatory protein	-
ACJEHT_RS01985 (ACJEHT_01985)	-	453767..455215 (-)	1449	WP_011215544.1	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 32759.36 Da
• Isoelectric Point: 8.0781

>NTDB_id=1076419 ACJEHT_RS01960 WP_011215548.1 449444..450307(+) (pilD) [Legionella pneumophila strain SPF582]
MINALIINYPWFMYLLVGLFSLAVGSLLNVIIYRLPIILQEEWKEQCCELFHFEQRKEKIKLNLFLPRSFCPHCKAMVKA
WQNIPLLSYILLRGRCYQCGSPISIRYPFVETLTTVLSLYASWHFGFTIQLLFALLAIWILISLVFIDLDHQLLPDSLTL
GLLWIGLIANTQNVFVSLDVAVLSCAGAYLALWLFINLFYLMTGKVGMGHGDFKLFAAFGAWLGWMYLPLILLISSITGA
IIGLIYLKINGKSRDTAIPFGPFLCISGLIAMFWGDSIINWYIGYWM

Nucleotide

• Length: 864 bp

>NTDB_id=1076419 ACJEHT_RS01960 WP_011215548.1 449444..450307(+) (pilD) [Legionella pneumophila strain SPF582]
ATGATAAACGCACTAATAATCAATTATCCATGGTTTATGTATTTACTCGTTGGCCTCTTTTCTCTAGCCGTTGGAAGTTT
GCTTAATGTGATAATCTATCGCTTACCAATTATTTTGCAGGAAGAGTGGAAAGAGCAATGCTGTGAGCTATTCCATTTTG
AACAGCGAAAAGAAAAAATAAAACTTAATTTATTTTTACCACGTTCTTTTTGTCCTCATTGTAAAGCGATGGTTAAAGCG
TGGCAGAATATTCCTCTGTTAAGCTATATTTTGTTAAGAGGACGCTGTTACCAATGTGGTAGTCCAATTTCAATCCGCTA
CCCTTTTGTTGAGACGTTGACTACAGTTTTATCCTTATACGCCAGTTGGCACTTTGGGTTTACAATACAATTATTATTTG
CTTTATTAGCTATCTGGATATTAATATCACTTGTTTTTATTGATCTTGATCATCAATTACTCCCTGATAGCCTCACTTTA
GGGCTCTTATGGATTGGCCTTATTGCTAATACCCAGAATGTATTTGTTAGTCTTGACGTTGCTGTATTAAGCTGCGCTGG
CGCCTATTTAGCCTTATGGTTATTCATTAATCTGTTTTATCTGATGACAGGTAAAGTAGGTATGGGACATGGAGATTTCA
AATTATTTGCAGCATTTGGTGCCTGGCTTGGATGGATGTATTTACCATTAATTCTGCTAATATCTTCAATAACGGGGGCT
ATCATTGGTTTGATTTATTTAAAGATAAATGGTAAATCAAGAGATACTGCAATACCATTTGGTCCTTTTCTTTGTATTTC
TGGATTAATAGCTATGTTTTGGGGAGACTCAATTATCAATTGGTATATAGGTTATTGGATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

3D structure

• AlphaFold DB: Q5WWF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.466	97.909	0.484
pilD	Acinetobacter nosocomialis M2	47.985	95.122	0.456
pilD	Acinetobacter baumannii D1279779	47.273	95.819	0.453
pilD	Vibrio campbellii strain DS40M4	45.29	96.167	0.436
pilD	Neisseria gonorrhoeae MS11	42.806	96.864	0.415