Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACJEHH_RS13540 Genome accession   NZ_CP174238
Coordinates   2990282..2990986 (-) Length   234 a.a.
NCBI ID   WP_011216223.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF587     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2985282..2995986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHH_RS13510 (ACJEHH_13510) prmC 2985327..2986190 (-) 864 WP_011216228.1 peptide chain release factor N(5)-glutamine methyltransferase -
  ACJEHH_RS13515 (ACJEHH_13515) prfA 2986183..2987271 (-) 1089 WP_010948042.1 peptide chain release factor 1 -
  ACJEHH_RS13520 (ACJEHH_13520) hemA 2987255..2988529 (-) 1275 WP_011216227.1 glutamyl-tRNA reductase -
  ACJEHH_RS13525 (ACJEHH_13525) - 2988653..2988808 (-) 156 WP_162470365.1 hypothetical protein -
  ACJEHH_RS13530 (ACJEHH_13530) - 2988847..2989125 (+) 279 WP_011216225.1 hypothetical protein -
  ACJEHH_RS13535 (ACJEHH_13535) - 2989182..2990255 (+) 1074 WP_041173811.1 RIP metalloprotease -
  ACJEHH_RS13540 (ACJEHH_13540) comFC 2990282..2990986 (-) 705 WP_011216223.1 ComF family protein Machinery gene
  ACJEHH_RS13545 (ACJEHH_13545) bioC 2991030..2991884 (+) 855 WP_011216222.1 malonyl-ACP O-methyltransferase BioC -
  ACJEHH_RS13550 (ACJEHH_13550) - 2991928..2992824 (-) 897 WP_011216221.1 polyprenyl synthetase family protein -
  ACJEHH_RS13555 (ACJEHH_13555) - 2992805..2993035 (-) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  ACJEHH_RS13560 (ACJEHH_13560) lem22 2993229..2993612 (-) 384 WP_011216220.1 Dot/Icm T4SS effector Lem22 -
  ACJEHH_RS13565 (ACJEHH_13565) - 2993876..2994754 (-) 879 WP_011216219.1 lpg2327 family Dot/Icm T4SS effector -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26802.40 Da        Isoelectric Point: 9.2794

>NTDB_id=1076236 ACJEHH_RS13540 WP_011216223.1 2990282..2990986(-) (comFC) [Legionella pneumophila strain SPF587]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVPHVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1076236 ACJEHH_RS13540 WP_011216223.1 2990282..2990986(-) (comFC) [Legionella pneumophila strain SPF587]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAACTTGGATCATGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGTCAA
AAAATAATCAATACCGCTTCACAAGCTAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACC
ACATGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAACTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

99.145

100

0.991
  comFC Legionella pneumophila strain ERS1305867

98.98

83.761

0.829

Multiple sequence alignment