Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AABJ90_RS18550 Genome accession   NZ_AP028964
Coordinates   3613904..3614854 (-) Length   316 a.a.
NCBI ID   WP_262120201.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3608904..3619854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS18530 (BsubNA05_35830) ycnB 3609772..3611190 (+) 1419 WP_014478836.1 MDR family MFS transporter -
  AABJ90_RS18535 (BsubNA05_35840) yclQ 3611237..3612190 (-) 954 WP_221777009.1 petrobactin ABC transporter substrate-binding protein YclQ -
  AABJ90_RS18540 (BsubNA05_35850) yclP 3612212..3612970 (-) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  AABJ90_RS18545 (BsubNA05_35860) yclO 3612964..3613911 (-) 948 WP_338382220.1 petrobactin ABC transporter permease YclO -
  AABJ90_RS18550 (BsubNA05_35870) ceuB 3613904..3614854 (-) 951 WP_262120201.1 petrobactin ABC transporter permease YclN Machinery gene
  AABJ90_RS18555 (BsubNA05_35880) thrD 3615239..3616603 (+) 1365 WP_338382221.1 aspartate kinase -
  AABJ90_RS18560 yczN 3616756..3616869 (+) 114 WP_032728921.1 YjcZ family sporulation protein -
  AABJ90_RS18565 yczM 3616951..3617040 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  AABJ90_RS18570 (BsubNA05_35890) phrC 3617140..3617262 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  AABJ90_RS18575 (BsubNA05_35900) rapC 3617246..3618394 (-) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34837.26 Da        Isoelectric Point: 9.9364

>NTDB_id=107617 AABJ90_RS18550 WP_262120201.1 3613904..3614854(-) (ceuB) [Bacillus subtilis strain NA05 = NBRC 116153]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKLTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=107617 AABJ90_RS18550 WP_262120201.1 3613904..3614854(-) (ceuB) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TTGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTCTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTGACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTCGGCC
TGAAGTACAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGCACTATTGGGAGCGGTTTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment