Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   ACJEIB_RS10040 Genome accession   NZ_CP174236
Coordinates   2223639..2224196 (-) Length   185 a.a.
NCBI ID   WP_011215959.1    Uniprot ID   Q5WV46
Organism   Legionella pneumophila strain SPF589     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218639..2229196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEIB_RS10015 (ACJEIB_10015) - 2218801..2219376 (-) 576 WP_241651499.1 hypothetical protein -
  ACJEIB_RS10020 (ACJEIB_10020) - 2219643..2220293 (-) 651 WP_129904981.1 lysoplasmalogenase -
  ACJEIB_RS10025 (ACJEIB_10025) - 2220363..2220863 (-) 501 WP_129904980.1 hypothetical protein -
  ACJEIB_RS10030 (ACJEIB_10030) - 2221355..2222215 (+) 861 WP_181444925.1 polysaccharide deacetylase family protein -
  ACJEIB_RS10035 (ACJEIB_10035) - 2222333..2223529 (-) 1197 WP_027265081.1 murein transglycosylase A -
  ACJEIB_RS10040 (ACJEIB_10040) lpp1976 2223639..2224196 (-) 558 WP_011215959.1 hypothetical protein Machinery gene
  ACJEIB_RS10045 (ACJEIB_10045) lpp1977 2224193..2224999 (-) 807 WP_011215960.1 PilW family protein Machinery gene
  ACJEIB_RS10050 (ACJEIB_10050) lpp1978 2224938..2225252 (-) 315 WP_011215961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACJEIB_RS10055 (ACJEIB_10055) hisC 2225412..2226521 (+) 1110 WP_011215962.1 histidinol-phosphate transaminase -
  ACJEIB_RS10060 (ACJEIB_10060) - 2226558..2226899 (+) 342 WP_011215963.1 4a-hydroxytetrahydrobiopterin dehydratase -
  ACJEIB_RS10065 (ACJEIB_10065) secF 2227089..2228006 (-) 918 WP_011215964.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21619.06 Da        Isoelectric Point: 6.9395

>NTDB_id=1076143 ACJEIB_RS10040 WP_011215959.1 2223639..2224196(-) (lpp1976) [Legionella pneumophila strain SPF589]
MKKTDSGFILLMTLCITFLMSLLVLASLQLIFLQYKALNSQETFHQNFYQLEHWMMRLARSPLLYAGMDCYVQKDYGANK
IANELVNNKGCLLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESAIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1076143 ACJEIB_RS10040 WP_011215959.1 2223639..2224196(-) (lpp1976) [Legionella pneumophila strain SPF589]
ATGAAAAAAACTGATTCCGGTTTCATTCTTTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACTGATATTCTTGCAATACAAAGCACTCAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTGGCGCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATGTGCAAAAAGATTATGGAGCTAATAAA
ATAGCAAACGAGTTGGTTAACAATAAAGGATGTTTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
TAACGAGTTTTCTTGCTTGGTTCTTAATAAAGATGGGCAGAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATCTGCCATCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAAGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WV46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila str. Paris

97.838

100

0.978
  lpp1976 Legionella pneumophila strain ERS1305867

96.757

100

0.968

Multiple sequence alignment