Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AABJ90_RS09690 Genome accession   NZ_AP028964
Coordinates   1847839..1848459 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842839..1853459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS09670 (BsubNA05_18720) dnaD 1843115..1843813 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  AABJ90_RS09675 (BsubNA05_18730) nth 1843832..1844491 (+) 660 WP_009967580.1 endonuclease III -
  AABJ90_RS09680 (BsubNA05_18740) ypoC 1844488..1844982 (+) 495 WP_009967579.1 YpoC family protein -
  AABJ90_RS09685 (BsubNA05_18750) ponA 1845058..1847817 (-) 2760 WP_038429203.1 PBP1A family penicillin-binding protein -
  AABJ90_RS09690 (BsubNA05_18760) recU 1847839..1848459 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AABJ90_RS09695 (BsubNA05_18770) yppC 1848500..1849462 (+) 963 WP_144530210.1 DUF2515 domain-containing protein -
  AABJ90_RS09700 sspM 1849487..1849591 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AABJ90_RS09705 (BsubNA05_18780) yppD 1849789..1850034 (+) 246 WP_004398488.1 YppD family protein -
  AABJ90_RS09710 (BsubNA05_18790) yppE 1850080..1850451 (+) 372 WP_003246080.1 YppE family protein -
  AABJ90_RS09715 (BsubNA05_18800) yppF 1850490..1850678 (-) 189 WP_003230690.1 YppF family protein -
  AABJ90_RS09720 (BsubNA05_18810) yppG 1850865..1851242 (+) 378 WP_247470506.1 YppG family protein -
  AABJ90_RS09725 (BsubNA05_18820) ypqA 1851263..1851682 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  AABJ90_RS09730 (BsubNA05_18830) ypqE 1851820..1852326 (+) 507 WP_015483368.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=107590 AABJ90_RS09690 WP_004399067.1 1847839..1848459(-) (recU) [Bacillus subtilis strain NA05 = NBRC 116153]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=107590 AABJ90_RS09690 WP_004399067.1 1847839..1848459(-) (recU) [Bacillus subtilis strain NA05 = NBRC 116153]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment