Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AABJ90_RS08675 Genome accession   NZ_AP028964
Coordinates   1666961..1667764 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1661961..1672764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS08655 (BsubNA05_16670) yqxC 1662072..1662917 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  AABJ90_RS08660 (BsubNA05_16680) argR 1663015..1663464 (+) 450 WP_003230265.1 arginine repressor ArgR -
  AABJ90_RS08665 (BsubNA05_16690) recN 1663501..1665231 (+) 1731 WP_128993138.1 DNA repair protein RecN Machinery gene
  AABJ90_RS08670 (BsubNA05_16700) spoIVB 1665405..1666685 (+) 1281 WP_014480228.1 SpoIVB peptidase -
  AABJ90_RS08675 (BsubNA05_16710) spo0A 1666961..1667764 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AABJ90_RS08680 (BsubNA05_16720) yqiG 1668228..1669346 (-) 1119 WP_131227606.1 NADH-dependent flavin oxidoreductase -
  AABJ90_RS08685 - 1669419..1669571 (-) 153 WP_014480226.1 hypothetical protein -
  AABJ90_RS08690 (BsubNA05_16730) - 1669879..1670175 (+) 297 WP_014480225.1 hypothetical protein -
  AABJ90_RS08695 (BsubNA05_16740) yqiI 1670195..1670815 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  AABJ90_RS08700 (BsubNA05_16750) glpQ 1670894..1671625 (+) 732 WP_101502442.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=107589 AABJ90_RS08675 WP_003226427.1 1666961..1667764(+) (spo0A) [Bacillus subtilis strain NA05 = NBRC 116153]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=107589 AABJ90_RS08675 WP_003226427.1 1666961..1667764(+) (spo0A) [Bacillus subtilis strain NA05 = NBRC 116153]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment