Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AABJ90_RS10500 Genome accession   NZ_AP028964
Coordinates   1979136..1980266 (-) Length   376 a.a.
NCBI ID   WP_032725937.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1977440..1992639 1979136..1980266 within 0


Gene organization within MGE regions


Location: 1977440..1992639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS10475 (BsubNA05_20250) yobM 1977446..1978003 (+) 558 WP_029318053.1 SMI1/KNR4 family protein -
  AABJ90_RS10480 - 1978102..1978257 (+) 156 Protein_2059 T7SS effector LXG polymorphic toxin -
  AABJ90_RS10485 - 1978252..1978424 (+) 173 Protein_2060 hypothetical protein -
  AABJ90_RS10490 - 1978649..1978849 (+) 201 WP_021481449.1 hypothetical protein -
  AABJ90_RS10495 (BsubNA05_20270) - 1979003..1979146 (-) 144 WP_153801665.1 hypothetical protein -
  AABJ90_RS10500 (BsubNA05_20280) rapC 1979136..1980266 (-) 1131 WP_032725937.1 tetratricopeptide repeat protein Regulator
  AABJ90_RS10505 - 1980399..1980545 (-) 147 Protein_2064 phage holin -
  AABJ90_RS10510 (BsubNA05_20290) - 1981341..1981715 (-) 375 WP_046663332.1 YoqO family protein -
  AABJ90_RS10515 - 1981979..1982275 (-) 297 Protein_2066 SOS response-associated peptidase family protein -
  AABJ90_RS10520 (BsubNA05_20310) - 1982456..1982821 (-) 366 WP_029318057.1 hypothetical protein -
  AABJ90_RS10525 (BsubNA05_20320) - 1982850..1983767 (-) 918 WP_051922667.1 SAR2788 family putative toxin -
  AABJ90_RS10530 (BsubNA05_20330) - 1983787..1984692 (-) 906 WP_032725934.1 S8 family serine peptidase -
  AABJ90_RS10535 (BsubNA05_20340) - 1985082..1986149 (+) 1068 WP_131227500.1 hypothetical protein -
  AABJ90_RS10540 (BsubNA05_20350) - 1986412..1987188 (+) 777 WP_131227499.1 DUF6414 family protein -
  AABJ90_RS10545 (BsubNA05_20360) - 1987178..1988287 (+) 1110 WP_131227498.1 AAA family ATPase -
  AABJ90_RS10550 (BsubNA05_20370) - 1988364..1988585 (+) 222 WP_116315615.1 hypothetical protein -
  AABJ90_RS10555 (BsubNA05_20380) - 1988630..1989022 (+) 393 WP_029727206.1 UPF0715 family protein -
  AABJ90_RS10560 (BsubNA05_20390) - 1989027..1989257 (-) 231 WP_131227497.1 hypothetical protein -
  AABJ90_RS10565 - 1989369..1989470 (-) 102 Protein_2076 hypothetical protein -
  AABJ90_RS10570 (BsubNA05_20400) - 1989501..1989716 (+) 216 WP_124048211.1 hypothetical protein -
  AABJ90_RS10575 (BsubNA05_20410) - 1989796..1990680 (+) 885 WP_131227496.1 DUF5677 domain-containing protein -
  AABJ90_RS10580 (BsubNA05_20420) - 1990729..1991217 (+) 489 WP_131227495.1 hypothetical protein -
  AABJ90_RS10585 (BsubNA05_20430) - 1991238..1991747 (+) 510 WP_131227494.1 super-infection exclusion protein B -
  AABJ90_RS10590 (BsubNA05_20440) - 1991770..1992639 (+) 870 WP_124048215.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44394.15 Da        Isoelectric Point: 5.7041

>NTDB_id=107591 AABJ90_RS10500 WP_032725937.1 1979136..1980266(-) (rapC) [Bacillus subtilis strain NA05 = NBRC 116153]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=107591 AABJ90_RS10500 WP_032725937.1 1979136..1980266(-) (rapC) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment