Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | AABJ90_RS10500 | Genome accession | NZ_AP028964 |
| Coordinates | 1979136..1980266 (-) | Length | 376 a.a. |
| NCBI ID | WP_032725937.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain NA05 = NBRC 116153 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1974136..1985266
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABJ90_RS10460 (BsubNA05_20220) | yobQ | 1974510..1975235 (+) | 726 | WP_080265377.1 | helix-turn-helix domain-containing protein | - |
| AABJ90_RS10465 (BsubNA05_20230) | csaA | 1975300..1975632 (+) | 333 | WP_029318051.1 | chaperone CsaA | - |
| AABJ90_RS10470 (BsubNA05_20240) | yobN | 1975882..1977318 (-) | 1437 | WP_145983550.1 | flavin monoamine oxidase family protein | - |
| AABJ90_RS10475 (BsubNA05_20250) | yobM | 1977446..1978003 (+) | 558 | WP_029318053.1 | SMI1/KNR4 family protein | - |
| AABJ90_RS10480 | - | 1978102..1978257 (+) | 156 | Protein_2059 | T7SS effector LXG polymorphic toxin | - |
| AABJ90_RS10485 | - | 1978252..1978424 (+) | 173 | Protein_2060 | hypothetical protein | - |
| AABJ90_RS10490 | - | 1978649..1978849 (+) | 201 | WP_021481449.1 | hypothetical protein | - |
| AABJ90_RS10495 (BsubNA05_20270) | - | 1979003..1979146 (-) | 144 | WP_153801665.1 | hypothetical protein | - |
| AABJ90_RS10500 (BsubNA05_20280) | rapC | 1979136..1980266 (-) | 1131 | WP_032725937.1 | tetratricopeptide repeat protein | Regulator |
| AABJ90_RS10505 | - | 1980399..1980545 (-) | 147 | Protein_2064 | phage holin | - |
| AABJ90_RS10510 (BsubNA05_20290) | - | 1981341..1981715 (-) | 375 | WP_046663332.1 | YoqO family protein | - |
| AABJ90_RS10515 | - | 1981979..1982275 (-) | 297 | Protein_2066 | SOS response-associated peptidase family protein | - |
| AABJ90_RS10520 (BsubNA05_20310) | - | 1982456..1982821 (-) | 366 | WP_029318057.1 | hypothetical protein | - |
| AABJ90_RS10525 (BsubNA05_20320) | - | 1982850..1983767 (-) | 918 | WP_051922667.1 | SAR2788 family putative toxin | - |
| AABJ90_RS10530 (BsubNA05_20330) | - | 1983787..1984692 (-) | 906 | WP_032725934.1 | S8 family serine peptidase | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 44394.15 Da Isoelectric Point: 5.7041
>NTDB_id=107591 AABJ90_RS10500 WP_032725937.1 1979136..1980266(-) (rapC) [Bacillus subtilis strain NA05 = NBRC 116153]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI
Nucleotide
Download Length: 1131 bp
>NTDB_id=107591 AABJ90_RS10500 WP_032725937.1 1979136..1980266(-) (rapC) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
51.064 |
100 |
0.511 |
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
45.119 |
100 |
0.455 |