Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AABJ90_RS06940 Genome accession   NZ_AP028964
Coordinates   1369369..1370115 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1364369..1375115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS06925 (BsubNA05_13340) - 1364596..1364787 (-) 192 WP_003222590.1 hypothetical protein -
  AABJ90_RS06930 (BsubNA05_13350) valS 1365235..1367877 (+) 2643 WP_017697542.1 valine--tRNA ligase -
  AABJ90_RS06935 (BsubNA05_13360) folC 1367937..1369229 (+) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AABJ90_RS06940 (BsubNA05_13370) comC 1369369..1370115 (+) 747 WP_072592551.1 A24 family peptidase Machinery gene
  AABJ90_RS06945 (BsubNA05_13380) spoIIB 1370249..1371247 (+) 999 WP_015251545.1 stage II sporulation protein SpoIIB -
  AABJ90_RS06950 (BsubNA05_13390) maf 1371400..1371969 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  AABJ90_RS06955 (BsubNA05_13400) radC 1372006..1372701 (+) 696 WP_015251546.1 DNA repair protein RadC -
  AABJ90_RS06960 (BsubNA05_13410) mreB 1372793..1373806 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AABJ90_RS06965 (BsubNA05_13420) mreC 1373837..1374709 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=107570 AABJ90_RS06940 WP_072592551.1 1369369..1370115(+) (comC) [Bacillus subtilis strain NA05 = NBRC 116153]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=107570 AABJ90_RS06940 WP_072592551.1 1369369..1370115(+) (comC) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment