Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   ACJEIG_RS07275 Genome accession   NZ_CP174209
Coordinates   1639507..1639956 (+) Length   149 a.a.
NCBI ID   WP_027266708.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF666     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1634507..1644956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEIG_RS07265 (ACJEIG_07265) - 1635461..1635973 (+) 513 WP_027266710.1 pilus assembly protein -
  ACJEIG_RS07270 (ACJEIG_07270) - 1635986..1639495 (+) 3510 WP_050512877.1 pilus assembly protein -
  ACJEIG_RS07275 (ACJEIG_07275) pilE 1639507..1639956 (+) 450 WP_027266708.1 type IV pilin protein Machinery gene
  ACJEIG_RS07280 (ACJEIG_07280) comEC 1640034..1642241 (+) 2208 WP_047661654.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACJEIG_RS07285 (ACJEIG_07285) - 1642269..1643576 (-) 1308 WP_047661652.1 tetratricopeptide repeat protein -
  ACJEIG_RS07290 (ACJEIG_07290) - 1643777..1644154 (-) 378 WP_047661651.1 hypothetical protein -
  ACJEIG_RS07295 (ACJEIG_07295) - 1644292..1644684 (+) 393 WP_047661649.1 hypothetical protein -

Sequence


Protein


Download         Length: 149 a.a.        Molecular weight: 16292.48 Da        Isoelectric Point: 8.1177

>NTDB_id=1075010 ACJEIG_RS07275 WP_027266708.1 1639507..1639956(+) (pilE) [Legionella pneumophila strain SPF666]
MRSNGHFMKNKHMRQSAFTLVEVLISMVIVGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1075010 ACJEIG_RS07275 WP_027266708.1 1639507..1639956(+) (pilE) [Legionella pneumophila strain SPF666]
ATGCGTAGCAATGGACATTTTATGAAGAATAAGCATATGAGACAATCCGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTGTGGGAATTCTGGTTTCCATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCGGATGCGC
ATGCCACATTGACACAAGATCAAATCATTTTAGAACGCTGTTATTCACAGAATTTTTCTTATGCTGCGGCGTGTGGGGCC
TTACCAGCATTTCCTCAAACAACTCCGAACGGGTACTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACCTT
AACCGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAACCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCTGCCAATGCGCAACCAGAATGCTGGAATCCCGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

95.302

100

0.953

  pilE Legionella pneumophila strain ERS1305867

95.302

100

0.953


Multiple sequence alignment