Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACJA24_RS16655 Genome accession   NZ_CP174198
Coordinates   3367090..3367779 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain LQ-03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362090..3372779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJA24_RS16620 fliW 3362181..3362612 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  ACJA24_RS16625 - 3362642..3363211 (-) 570 WP_024085861.1 DUF6470 family protein -
  ACJA24_RS16630 flgL 3363302..3364219 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACJA24_RS16635 flgK 3364231..3365748 (-) 1518 WP_406795318.1 flagellar hook-associated protein FlgK -
  ACJA24_RS16640 - 3365764..3366246 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACJA24_RS16645 flgM 3366261..3366527 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJA24_RS16650 - 3366597..3367016 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACJA24_RS16655 comFC 3367090..3367779 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ACJA24_RS16660 - 3367785..3368069 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACJA24_RS16665 comFA 3368127..3369512 (-) 1386 WP_014305928.1 DEAD/DEAH box helicase Machinery gene
  ACJA24_RS16670 - 3369620..3370468 (-) 849 WP_014305929.1 DegV family protein -
  ACJA24_RS16675 degU 3370566..3371255 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACJA24_RS16680 degS 3371332..3372495 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=1074943 ACJA24_RS16655 WP_196616643.1 3367090..3367779(-) (comFC) [Bacillus velezensis strain LQ-03]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1074943 ACJA24_RS16655 WP_196616643.1 3367090..3367779(-) (comFC) [Bacillus velezensis strain LQ-03]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment