Detailed information NTG1074826

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACI65L_RS18535
• Genome accession: NZ_CP174195
• Coordinates: 4119017..4119862 (-)
• Length: 281 a.a.
• NCBI ID: WP_039507897.1
• Uniprot ID: -
• Organism: Pectobacterium carotovorum strain PCC27
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4114017..4124862

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI65L_RS18510 (ACI65L_003688)	-	4114207..4114977 (-)	771	WP_201878546.1	ABC transporter ATP-binding protein	-
ACI65L_RS18515 (ACI65L_003689)	-	4114979..4116016 (-)	1038	WP_406627893.1	FecCD family ABC transporter permease	-
ACI65L_RS18520 (ACI65L_003690)	-	4116013..4117077 (-)	1065	WP_201878549.1	ABC transporter substrate-binding protein	-
ACI65L_RS18525 (ACI65L_003691)	-	4117400..4118425 (+)	1026	WP_010302944.1	LLM class flavin-dependent oxidoreductase	-
ACI65L_RS18530 (ACI65L_003692)	ypdK	4118782..4118856 (+)	75	WP_099606229.1	membrane protein YpdK	-
ACI65L_RS18535 (ACI65L_003693)	pilD	4119017..4119862 (-)	846	WP_039507897.1	A24 family peptidase	Machinery gene
ACI65L_RS18540 (ACI65L_003694)	-	4119952..4120698 (-)	747	WP_406627894.1	type II secretion system protein N	-
ACI65L_RS18545 (ACI65L_003695)	gspM	4120688..4121182 (-)	495	WP_039507900.1	type II secretion system protein GspM	-
ACI65L_RS18550 (ACI65L_003696)	gspL	4121179..4122456 (-)	1278	WP_039507901.1	type II secretion system protein GspL	-
ACI65L_RS18555 (ACI65L_003697)	gspK	4122453..4123439 (-)	987	WP_039471195.1	type II secretion system minor pseudopilin GspK	-
ACI65L_RS18560 (ACI65L_003698)	gspJ	4123436..4124086 (-)	651	WP_072037038.1	type II secretion system minor pseudopilin GspJ	-
ACI65L_RS18565 (ACI65L_003699)	gspI	4124086..4124451 (-)	366	WP_010302972.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31281.18 Da
• Isoelectric Point: 6.4529

>NTDB_id=1074826 ACI65L_RS18535 WP_039507897.1 4119017..4119862(-) (pilD) [Pectobacterium carotovorum strain PCC27]
MDDLREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGVADPDPDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGLRKEDTAKPLAFGPWLAIGGVFGVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=1074826 ACI65L_RS18535 WP_039507897.1 4119017..4119862(-) (pilD) [Pectobacterium carotovorum strain PCC27]
GTGGACGATTTAAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGGGCGCTGGGCGTGTTGGGGTTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCTATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCGTGGCCGATCCCGATCCTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCTATT
GCGGTAAAAGATAATATCCCGCTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGCCATCAATCGGTGTCTGT
GCAATATCCGTTAGTGGAAGTTATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATTTTGCTGTCCTTCCTGTTAGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGTTGCTGTTTAATCTGTCGGGGACATTTGTCTCATTGAATGATGCCGTAGTCGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTACTTTATTGGGCATTCAAATACGCAACTGGCAAAGAAGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGGGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTCTGGTGGCGGCGTTGAGC
GGGCTGGTCGTGACTCTCATCTGGCGCGGGTTGCGTAAAGAGGATACCGCTAAACCGCTGGCCTTTGGCCCTTGGCTAGC
CATTGGTGGTGTGTTCGGCGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.292	96.441	0.495
pilD	Vibrio campbellii strain DS40M4	47.037	96.085	0.452
pilD	Neisseria gonorrhoeae MS11	46.36	92.883	0.431
pilD	Acinetobacter baumannii D1279779	43.704	96.085	0.42
pilD	Acinetobacter nosocomialis M2	43.333	96.085	0.416