Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACCO34_RS15920 Genome accession   NZ_CP174160
Coordinates   3142588..3143232 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SMT-24     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3137588..3148232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO34_RS15885 - 3138773..3139204 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  ACCO34_RS15890 - 3139204..3139545 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ACCO34_RS15895 - 3139538..3141019 (+) 1482 WP_139889984.1 Na+/H+ antiporter subunit D -
  ACCO34_RS15900 - 3141025..3141501 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  ACCO34_RS15905 - 3141501..3141785 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  ACCO34_RS15910 mnhG 3141769..3142143 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ACCO34_RS15915 - 3142183..3142566 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  ACCO34_RS15920 comA 3142588..3143232 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACCO34_RS15925 comP 3143313..3145616 (-) 2304 WP_003152050.1 histidine kinase Regulator
  ACCO34_RS15930 comQ 3145769..3146701 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  ACCO34_RS15935 degQ 3146886..3147026 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACCO34_RS15940 - 3147492..3147833 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1074777 ACCO34_RS15920 WP_003152052.1 3142588..3143232(-) (comA) [Bacillus velezensis strain SMT-24]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1074777 ACCO34_RS15920 WP_003152052.1 3142588..3143232(-) (comA) [Bacillus velezensis strain SMT-24]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGTGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment