Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACCH06_RS12775 Genome accession   NZ_CP174157
Coordinates   2588889..2589959 (-) Length   356 a.a.
NCBI ID   WP_406589048.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2583889..2594959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS12730 tapA 2584425..2585126 (-) 702 WP_406589046.1 amyloid fiber anchoring/assembly protein TapA -
  ACCH06_RS12735 - 2585387..2585710 (+) 324 WP_406589047.1 YqzG/YhdC family protein -
  ACCH06_RS12740 - 2585757..2585936 (-) 180 WP_003325435.1 YqzE family protein -
  ACCH06_RS12745 comGG 2586006..2586380 (-) 375 WP_258729498.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACCH06_RS12750 comGF 2586381..2586776 (-) 396 WP_309484978.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACCH06_RS12755 comGE 2586790..2587137 (-) 348 WP_258729499.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACCH06_RS12760 comGD 2587121..2587561 (-) 441 WP_106046743.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACCH06_RS12765 comGC 2587551..2587850 (-) 300 WP_003325429.1 competence type IV pilus major pilin ComGC Machinery gene
  ACCH06_RS12770 comGB 2587865..2588902 (-) 1038 WP_258729500.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACCH06_RS12775 comGA 2588889..2589959 (-) 1071 WP_406589048.1 competence type IV pilus ATPase ComGA Machinery gene
  ACCH06_RS12780 - 2590342..2591295 (-) 954 WP_258729502.1 magnesium transporter CorA family protein -
  ACCH06_RS12785 - 2591417..2592765 (+) 1349 Protein_2479 hemolysin family protein -
  ACCH06_RS12790 - 2592832..2593683 (-) 852 WP_406589049.1 STAS domain-containing protein -
  ACCH06_RS12800 - 2593951..2594331 (-) 381 WP_003325422.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ACCH06_RS12805 - 2594569..2594814 (+) 246 WP_003325421.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40472.73 Da        Isoelectric Point: 9.3603

>NTDB_id=1074685 ACCH06_RS12775 WP_406589048.1 2588889..2589959(-) (comGA) [Bacillus atrophaeus strain SHZ-24]
MDTIEKTSRTLIEEAYSVKASDIHIVPREQDALIHFRIDHALLKKRTMKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LKLKNGTVYLRMSTLPTINDESLVIRVLPQHNIPVIERLSLFPKTGATLLSFLKHSHGLIIFTGPTGSGKSTTLHSLVQY
AKKHFNRNIITLEDPVETRDQDVLQVQVNEKAGITYSAGLKAILRHDPDMIVLGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGVNMNEIEQTAIAIAAQRLVDLTCPFCENGCSSVYCRITRDVRRATIYELLYGKNLQQCIQEARGE
RANYQYRTLRQIIRKGIALGYLTTNNYDRWVYHEED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1074685 ACCH06_RS12775 WP_406589048.1 2588889..2589959(-) (comGA) [Bacillus atrophaeus strain SHZ-24]
TTGGATACGATAGAAAAAACTAGCAGGACATTAATTGAAGAGGCATATTCCGTGAAGGCCTCGGATATTCACATTGTACC
AAGGGAGCAAGATGCTTTGATCCATTTTCGAATTGACCATGCATTGCTGAAGAAGCGGACAATGAAAAAGGAAGAGTGCG
TTCGGCTCATTTCCCATTTTAAATTTCTGTCAGCCATGGATATAGGAGAAAGGCGGAAGCCGCAAAATGGTTCACTTTCT
TTAAAGCTTAAAAATGGGACAGTTTATCTCAGAATGTCGACACTTCCTACGATTAATGATGAAAGCCTCGTGATCAGAGT
TTTGCCTCAGCATAATATTCCTGTGATCGAAAGACTGTCCCTGTTCCCAAAGACAGGCGCCACGCTGCTATCCTTTTTAA
AGCACTCCCATGGCCTCATTATTTTTACCGGTCCGACTGGCTCAGGGAAATCTACCACCCTACATTCACTGGTTCAATAT
GCAAAAAAGCATTTCAACCGAAATATTATCACTCTCGAAGATCCTGTGGAAACTAGAGATCAGGATGTCTTGCAGGTACA
GGTGAATGAAAAAGCCGGCATTACGTACTCAGCGGGCCTGAAGGCGATTTTGCGCCATGATCCAGACATGATTGTTCTGG
GGGAAATCAGGGATGCTGAAACAGCAAAAATCGCCGTGCGGGCTGCTATGACAGGCCATTTGGTATTAACAAGCCTGCAC
ACAAGAGATGCCAAGGGCGCCATTTACAGACTGCTTGAATTCGGAGTAAATATGAATGAAATAGAGCAAACAGCGATTGC
GATAGCAGCCCAGCGATTAGTCGACTTAACCTGTCCATTTTGTGAAAACGGCTGTTCCTCTGTTTATTGCCGGATTACAC
GTGATGTAAGGCGAGCGACCATTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATACAAGAAGCTAGAGGAGAA
CGGGCCAATTATCAGTACCGAACCTTACGGCAGATTATCAGAAAAGGAATCGCGCTTGGCTATCTAACGACGAATAATTA
TGACCGGTGGGTTTATCATGAAGAGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

87.921

100

0.879

Multiple sequence alignment