Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACCH06_RS07960 Genome accession   NZ_CP174157
Coordinates   1574691..1575272 (+) Length   193 a.a.
NCBI ID   WP_406590016.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1569691..1580272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS07930 dapD 1569811..1570521 (+) 711 WP_003327258.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ACCH06_RS07935 - 1570594..1571718 (+) 1125 WP_258729133.1 N-acetyldiaminopimelate deacetylase -
  ACCH06_RS07940 - 1571779..1572024 (+) 246 WP_003327256.1 YkuS family protein -
  ACCH06_RS07945 - 1572063..1572866 (-) 804 WP_003327255.1 mechanosensitive ion channel family protein -
  ACCH06_RS07950 ahpA 1573116..1573658 (+) 543 WP_003327254.1 biofilm-specific peroxidase AhpA -
  ACCH06_RS07955 - 1573744..1574202 (+) 459 WP_003327253.1 TlpA disulfide reductase family protein -
  ACCH06_RS07960 rok 1574691..1575272 (+) 582 WP_406590016.1 transcriptional regulator Rok Regulator
  ACCH06_RS07965 - 1575318..1576277 (-) 960 WP_406590017.1 sporulation protein -
  ACCH06_RS07970 - 1576421..1577005 (+) 585 WP_406590018.1 molybdenum cofactor guanylyltransferase -
  ACCH06_RS07975 - 1577077..1578096 (+) 1020 WP_010788468.1 MoeB/ThiF family adenylyltransferase -
  ACCH06_RS07980 glp 1578116..1579408 (+) 1293 WP_406590019.1 gephyrin-like molybdotransferase Glp -
  ACCH06_RS07985 mobB 1579369..1579893 (+) 525 WP_406590020.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21926.85 Da        Isoelectric Point: 9.8783

>NTDB_id=1074668 ACCH06_RS07960 WP_406590016.1 1574691..1575272(+) (rok) [Bacillus atrophaeus strain SHZ-24]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSSAAETKKDFRPERKSESLPVLAELAAQEIRSYQPQ
QASQPQPQPQSTSSIPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIASDSAENVTE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1074668 ACCH06_RS07960 WP_406590016.1 1574691..1575272(+) (rok) [Bacillus atrophaeus strain SHZ-24]
ATGTTTAATGAGAGGGAAGCTTTACGCTTGCGTTTGGAACAGTTAAATGAGGCTGAGGTTAAAGTCATCCGTGAATATCA
AATAGAGCGTGACAAAATATATGCAAAACTAAGAGAGCTTGACCGCAATGGAAGCTCAGCAGCGGAAACAAAAAAAGATT
TTCGCCCTGAAAGAAAAAGTGAGTCTCTTCCTGTGCTAGCCGAGCTTGCAGCACAAGAGATCAGAAGCTATCAGCCGCAG
CAGGCATCACAGCCGCAGCCGCAGCCGCAATCCACCTCTTCTATTCCGGCGGGTATTCCGGACGGAACGACAAGAAGAAG
AAGAGGAACGGCAAGACCGGGTTCAAAGGCAGCAAAGCTTCGTGAAGCGGCAATCAAAACATTAAAACGCCATAACGCAG
CGATCAAAAGCTCCGAACTTCAAAAGGAAATTGAGAAGGAAAGCGGGCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGTTTAATTAAAATGTATCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGCGAAATCGCTTCAGACTC
TGCAGAAAATGTGACTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

100

0.865

Multiple sequence alignment