Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACJED3_RS17600 Genome accession   NZ_CP174155
Coordinates   3307817..3308461 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain G01     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3302817..3313461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS17570 - 3303168..3303536 (-) 369 WP_014477834.1 hypothetical protein -
  ACJED3_RS17575 - 3303650..3303775 (-) 126 WP_003228793.1 hypothetical protein -
  ACJED3_RS17580 degQ 3303997..3304137 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACJED3_RS17585 - 3304322..3305185 (+) 864 WP_014480705.1 polyprenyl synthetase family protein -
  ACJED3_RS17590 comX 3305187..3305408 (+) 222 WP_014480704.1 competence pheromone ComX -
  ACJED3_RS17595 comP 3305424..3307736 (+) 2313 WP_014480703.1 sensor histidine kinase Regulator
  ACJED3_RS17600 comA 3307817..3308461 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACJED3_RS17605 yuxO 3308480..3308860 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  ACJED3_RS17610 mnhG 3308899..3309273 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  ACJED3_RS17615 mrpF 3309257..3309541 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACJED3_RS17620 mrpE 3309541..3310017 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ACJED3_RS17625 mrpD 3310023..3311504 (-) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  ACJED3_RS17630 mrpC 3311497..3311838 (-) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  ACJED3_RS17635 mrpB 3311838..3312269 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1074612 ACJED3_RS17600 WP_003220716.1 3307817..3308461(+) (comA) [Bacillus subtilis strain G01]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1074612 ACJED3_RS17600 WP_003220716.1 3307817..3308461(+) (comA) [Bacillus subtilis strain G01]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment