Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACJED3_RS14955 Genome accession   NZ_CP174155
Coordinates   2816902..2817624 (+) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain G01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2811902..2822624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS14930 degS 2812212..2813369 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACJED3_RS14935 degU 2813452..2814141 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  ACJED3_RS14940 fakBA 2814239..2815084 (+) 846 WP_014481053.1 DegV family protein -
  ACJED3_RS14945 comFA 2815191..2816582 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  ACJED3_RS14950 comFB 2816642..2816938 (+) 297 WP_003227989.1 late competence protein ComFB -
  ACJED3_RS14955 comFC 2816902..2817624 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ACJED3_RS14960 yvyF 2817697..2818116 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  ACJED3_RS14965 flgM 2818197..2818463 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJED3_RS14970 flgN 2818479..2818961 (+) 483 WP_014481048.1 flagellar protein FlgN -
  ACJED3_RS14975 flgK 2818980..2820503 (+) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  ACJED3_RS14980 flgL 2820514..2821410 (+) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  ACJED3_RS14985 yviE 2821457..2822032 (+) 576 WP_014481045.1 DUF6470 family protein -
  ACJED3_RS14990 fliW 2822053..2822484 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=1074606 ACJED3_RS14955 WP_014481051.1 2816902..2817624(+) (comFC) [Bacillus subtilis strain G01]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1074606 ACJED3_RS14955 WP_014481051.1 2816902..2817624(+) (comFC) [Bacillus subtilis strain G01]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment