Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACJED3_RS14935 Genome accession   NZ_CP174155
Coordinates   2813452..2814141 (+) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain G01     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2808452..2819141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS14910 - 2808784..2809239 (-) 456 WP_014481057.1 hypothetical protein -
  ACJED3_RS14915 - 2809288..2809743 (-) 456 WP_041516563.1 hypothetical protein -
  ACJED3_RS14920 - 2810350..2811342 (-) 993 WP_014481056.1 LCP family protein -
  ACJED3_RS14925 - 2811342..2811995 (-) 654 WP_014481055.1 YigZ family protein -
  ACJED3_RS14930 degS 2812212..2813369 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACJED3_RS14935 degU 2813452..2814141 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  ACJED3_RS14940 fakBA 2814239..2815084 (+) 846 WP_014481053.1 DegV family protein -
  ACJED3_RS14945 comFA 2815191..2816582 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  ACJED3_RS14950 comFB 2816642..2816938 (+) 297 WP_003227989.1 late competence protein ComFB -
  ACJED3_RS14955 comFC 2816902..2817624 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ACJED3_RS14960 yvyF 2817697..2818116 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  ACJED3_RS14965 flgM 2818197..2818463 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJED3_RS14970 flgN 2818479..2818961 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=1074604 ACJED3_RS14935 WP_014481054.1 2813452..2814141(+) (degU) [Bacillus subtilis strain G01]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1074604 ACJED3_RS14935 WP_014481054.1 2813452..2814141(+) (degU) [Bacillus subtilis strain G01]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment