Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AABA74_RS15060 Genome accession   NZ_AP028932
Coordinates   3045181..3045825 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain RB.IBE29     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3040181..3050825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA74_RS15025 (RBIBE_28890) - 3041366..3041797 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  AABA74_RS15030 (RBIBE_28900) - 3041797..3042138 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  AABA74_RS15035 (RBIBE_28910) - 3042131..3043612 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  AABA74_RS15040 (RBIBE_28920) - 3043618..3044094 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  AABA74_RS15045 (RBIBE_28930) - 3044094..3044378 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  AABA74_RS15050 (RBIBE_28940) mnhG 3044362..3044736 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  AABA74_RS15055 (RBIBE_28950) - 3044776..3045159 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  AABA74_RS15060 (RBIBE_28960) comA 3045181..3045825 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  AABA74_RS15065 - 3045906..3048193 (-) 2288 Protein_2900 histidine kinase -
  AABA74_RS15070 (RBIBE_28990) comX 3048207..3048380 (-) 174 WP_012118314.1 competence pheromone ComX -
  AABA74_RS15075 (RBIBE_29000) - 3048349..3049209 (-) 861 WP_159073777.1 polyprenyl synthetase family protein -
  AABA74_RS15080 (RBIBE_29010) degQ 3049417..3049557 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  AABA74_RS15085 (RBIBE_29020) - 3050023..3050364 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=107444 AABA74_RS15060 WP_003152052.1 3045181..3045825(-) (comA) [Bacillus velezensis strain RB.IBE29]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=107444 AABA74_RS15060 WP_003152052.1 3045181..3045825(-) (comA) [Bacillus velezensis strain RB.IBE29]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCACGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment