Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AABA74_RS01775 Genome accession   NZ_AP028932
Coordinates   327997..328434 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain RB.IBE29     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 322997..333434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA74_RS01735 - 323577..323738 (-) 162 Protein_301 hypothetical protein -
  AABA74_RS01740 (RBIBE_02990) - 323855..325057 (+) 1203 Protein_302 GTP-binding protein -
  AABA74_RS01745 (RBIBE_03010) - 325122..326258 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  AABA74_RS01750 (RBIBE_03020) - 326273..326707 (+) 435 WP_003156592.1 RDD family protein -
  AABA74_RS01755 (RBIBE_03030) - 326779..327099 (+) 321 WP_015388719.1 YckD family protein -
  AABA74_RS01760 - 327203..327319 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  AABA74_RS01765 - 327318..327536 (+) 219 Protein_307 family 1 glycosylhydrolase -
  AABA74_RS01770 (RBIBE_03040) nin/comJ 327577..327975 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  AABA74_RS01775 (RBIBE_03050) nucA/comI 327997..328434 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AABA74_RS01780 (RBIBE_03060) hxlB 328793..329350 (-) 558 WP_077721772.1 6-phospho-3-hexuloisomerase -
  AABA74_RS01785 (RBIBE_03070) hxlA 329347..329982 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  AABA74_RS01790 (RBIBE_03080) - 330214..330576 (+) 363 WP_003156585.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=107391 AABA74_RS01775 WP_003156588.1 327997..328434(-) (nucA/comI) [Bacillus velezensis strain RB.IBE29]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=107391 AABA74_RS01775 WP_003156588.1 327997..328434(-) (nucA/comI) [Bacillus velezensis strain RB.IBE29]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment