Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACI7YU_RS18995 Genome accession   NZ_CP173722
Coordinates   4298756..4299391 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas siliginis strain P     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4293756..4304391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI7YU_RS18960 (ACI7YU_18970) - 4294150..4294620 (-) 471 WP_041479453.1 (2Fe-2S)-binding protein -
  ACI7YU_RS18965 (ACI7YU_18975) murB 4294871..4295890 (-) 1020 WP_406227153.1 UDP-N-acetylmuramate dehydrogenase -
  ACI7YU_RS18970 (ACI7YU_18980) - 4295887..4296351 (-) 465 WP_076563814.1 low molecular weight protein-tyrosine-phosphatase -
  ACI7YU_RS18975 (ACI7YU_18985) kdsB 4296351..4297115 (-) 765 WP_406227154.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACI7YU_RS18980 (ACI7YU_18990) - 4297112..4297297 (-) 186 WP_003179363.1 Trm112 family protein -
  ACI7YU_RS18985 (ACI7YU_18995) lpxK 4297321..4298331 (-) 1011 WP_406227155.1 tetraacyldisaccharide 4'-kinase -
  ACI7YU_RS18990 (ACI7YU_19000) - 4298331..4298759 (-) 429 WP_041479458.1 biopolymer transporter ExbD -
  ACI7YU_RS18995 (ACI7YU_19005) exbB 4298756..4299391 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACI7YU_RS19000 (ACI7YU_19010) comA 4299493..4301727 (-) 2235 WP_406227157.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACI7YU_RS19005 (ACI7YU_19015) - 4301864..4302382 (+) 519 WP_039760200.1 DUF2062 domain-containing protein -
  ACI7YU_RS19010 (ACI7YU_19020) - 4302522..4303301 (-) 780 WP_056788203.1 ABC transporter permease -
  ACI7YU_RS19015 (ACI7YU_19025) - 4303298..4304230 (-) 933 WP_076563818.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=1073831 ACI7YU_RS18995 WP_016771007.1 4298756..4299391(-) (exbB) [Pseudomonas siliginis strain P]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1073831 ACI7YU_RS18995 WP_016771007.1 4298756..4299391(-) (exbB) [Pseudomonas siliginis strain P]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCTGGCATGACCACCAATGCCTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGTCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment