Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACI5FU_RS00550 | Genome accession | NZ_CP173687 |
| Coordinates | 107133..107699 (+) | Length | 188 a.a. |
| NCBI ID | WP_002815494.1 | Uniprot ID | A0A223XQS1 |
| Organism | Leuconostoc mesenteroides strain DMLM18 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 102133..112699
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI5FU_RS00530 (ACI5FU_00530) | - | 102613..104289 (+) | 1677 | WP_011680506.1 | ABC transporter ATP-binding protein | - |
| ACI5FU_RS00535 (ACI5FU_00535) | - | 104291..105118 (+) | 828 | WP_135400192.1 | energy-coupling factor transporter transmembrane protein EcfT | - |
| ACI5FU_RS00540 (ACI5FU_00540) | pepV | 105115..106545 (+) | 1431 | WP_135400243.1 | dipeptidase PepV | - |
| ACI5FU_RS00545 (ACI5FU_00545) | rpsF | 106803..107099 (+) | 297 | WP_011680503.1 | 30S ribosomal protein S6 | - |
| ACI5FU_RS00550 (ACI5FU_00550) | ssb | 107133..107699 (+) | 567 | WP_002815494.1 | single-stranded DNA-binding protein | Machinery gene |
| ACI5FU_RS00555 (ACI5FU_00555) | rpsR | 107732..108016 (+) | 285 | WP_004911134.1 | 30S ribosomal protein S18 | - |
| ACI5FU_RS00560 (ACI5FU_00560) | - | 108186..110213 (+) | 2028 | WP_014325206.1 | DHH family phosphoesterase | - |
| ACI5FU_RS00565 (ACI5FU_00565) | rplI | 110230..110682 (+) | 453 | WP_042251058.1 | 50S ribosomal protein L9 | - |
| ACI5FU_RS00570 (ACI5FU_00570) | dnaB | 110684..112147 (+) | 1464 | WP_135400191.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20159.69 Da Isoelectric Point: 4.5478
>NTDB_id=1073664 ACI5FU_RS00550 WP_002815494.1 107133..107699(+) (ssb) [Leuconostoc mesenteroides strain DMLM18]
MINRVVLIGRLTRDVELRYTQSGVAVGTFSLAVNRQFTNASGEREADFINAVIWRKAAENFANFTGKGALVAVEGRLQTR
NYENNAGQRVYVTEVVVDNFSLLESRAESEKRRSQNGSSASNNGADNFSGSNDHSFGGNDNSFNGVDPFASASSNSNTQS
SASSNSAPNPFAASGNTEIDISDDDLPF
MINRVVLIGRLTRDVELRYTQSGVAVGTFSLAVNRQFTNASGEREADFINAVIWRKAAENFANFTGKGALVAVEGRLQTR
NYENNAGQRVYVTEVVVDNFSLLESRAESEKRRSQNGSSASNNGADNFSGSNDHSFGGNDNSFNGVDPFASASSNSNTQS
SASSNSAPNPFAASGNTEIDISDDDLPF
Nucleotide
Download Length: 567 bp
>NTDB_id=1073664 ACI5FU_RS00550 WP_002815494.1 107133..107699(+) (ssb) [Leuconostoc mesenteroides strain DMLM18]
ATGATTAATCGAGTAGTATTAATTGGGCGATTGACCCGTGATGTTGAATTACGTTACACACAATCAGGTGTAGCAGTCGG
TACGTTTAGCTTGGCGGTTAACCGTCAGTTCACCAACGCAAGTGGTGAACGTGAAGCTGACTTTATTAACGCCGTTATTT
GGCGAAAAGCAGCTGAAAACTTTGCAAACTTCACTGGAAAAGGTGCACTTGTGGCCGTTGAAGGTCGTTTGCAAACAAGA
AATTATGAAAATAATGCTGGCCAACGCGTTTACGTGACGGAAGTTGTTGTTGATAATTTCTCATTACTCGAATCTCGCGC
TGAAAGTGAAAAGCGTCGTTCTCAGAACGGATCATCGGCATCTAATAATGGTGCTGACAACTTCAGCGGATCAAACGATC
ATTCGTTTGGCGGTAATGACAACTCATTTAACGGTGTTGATCCGTTTGCAAGTGCGAGTTCAAACTCAAATACGCAATCA
TCAGCTTCGTCAAATAGTGCCCCTAACCCATTTGCGGCTAGTGGCAATACAGAAATTGATATATCAGATGATGATTTACC
ATTCTAA
ATGATTAATCGAGTAGTATTAATTGGGCGATTGACCCGTGATGTTGAATTACGTTACACACAATCAGGTGTAGCAGTCGG
TACGTTTAGCTTGGCGGTTAACCGTCAGTTCACCAACGCAAGTGGTGAACGTGAAGCTGACTTTATTAACGCCGTTATTT
GGCGAAAAGCAGCTGAAAACTTTGCAAACTTCACTGGAAAAGGTGCACTTGTGGCCGTTGAAGGTCGTTTGCAAACAAGA
AATTATGAAAATAATGCTGGCCAACGCGTTTACGTGACGGAAGTTGTTGTTGATAATTTCTCATTACTCGAATCTCGCGC
TGAAAGTGAAAAGCGTCGTTCTCAGAACGGATCATCGGCATCTAATAATGGTGCTGACAACTTCAGCGGATCAAACGATC
ATTCGTTTGGCGGTAATGACAACTCATTTAACGGTGTTGATCCGTTTGCAAGTGCGAGTTCAAACTCAAATACGCAATCA
TCAGCTTCGTCAAATAGTGCCCCTAACCCATTTGCGGCTAGTGGCAATACAGAAATTGATATATCAGATGATGATTTACC
ATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.766 |
100 |
0.628 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.596 |
100 |
0.516 |