Detailed information    

insolico Bioinformatically predicted

Overview


Name   radA   Type   Machinery gene
Locus tag   ACAM22_RS09765 Genome accession   NZ_AP028929
Coordinates   2082296..2083660 (-) Length   454 a.a.
NCBI ID   WP_261053370.1    Uniprot ID   -
Organism   Streptococcus sp. SN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2077296..2088660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS09740 - 2078158..2078540 (-) 383 Protein_1880 hypothetical protein -
  ACAM22_RS09745 (MASAN616_18760) - 2078530..2079501 (-) 972 WP_265471997.1 Rpn family recombination-promoting nuclease/putative transposase -
  ACAM22_RS09750 (MASAN616_18770) - 2079772..2080740 (-) 969 WP_000010158.1 ribose-phosphate diphosphokinase -
  ACAM22_RS09755 (MASAN616_18780) - 2080886..2081701 (-) 816 WP_261053333.1 PrsW family glutamic-type intramembrane protease -
  ACAM22_RS09760 (MASAN616_18790) - 2081726..2082223 (-) 498 WP_004237611.1 carbonic anhydrase -
  ACAM22_RS09765 (MASAN616_18800) radA 2082296..2083660 (-) 1365 WP_261053370.1 DNA repair protein RadA Machinery gene
  ACAM22_RS09770 (MASAN616_18810) - 2083671..2084186 (-) 516 WP_261053336.1 histidine phosphatase family protein -
  ACAM22_RS09775 (MASAN616_18820) - 2084205..2084507 (-) 303 Protein_1887 isochorismatase family protein -
  ACAM22_RS09780 - 2084503..2084643 (-) 141 Protein_1888 DNA repair protein RadA -
  ACAM22_RS09785 (MASAN616_18830) - 2084674..2085213 (-) 540 WP_261053371.1 histidine phosphatase family protein -
  ACAM22_RS09790 (MASAN616_18840) - 2085215..2085658 (-) 444 WP_000701987.1 dUTP diphosphatase -
  ACAM22_RS09800 (MASAN616_18850) tadA 2085845..2086312 (-) 468 WP_261053342.1 tRNA adenosine(34) deaminase TadA -
  ACAM22_RS09805 (MASAN616_18860) - 2086513..2087799 (-) 1287 WP_261053373.1 adenylosuccinate synthase -
  ACAM22_RS09810 (MASAN616_18870) comW 2088030..2088266 (-) 237 WP_000940045.1 sigma(X)-activator ComW Regulator

Sequence


Protein


Download         Length: 454 a.a.        Molecular weight: 49531.05 Da        Isoelectric Point: 6.8558

>NTDB_id=107366 ACAM22_RS09765 WP_261053370.1 2082296..2083660(-) (radA) [Streptococcus sp. SN-1]
MIAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTDMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEV
ERIQPNFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVSIASSYKDKPTNPQECFVGELGLTGEI
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=107366 ACAM22_RS09765 WP_261053370.1 2082296..2083660(-) (radA) [Streptococcus sp. SN-1]
ATCATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTAGGACGTTGTCCCAA
CTGTGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTAAAGAATGCGCGTGTGTCCTTGACAGGTGAGA
AAACCAAGCCCATGAAACTGGCTGAGGTGACTTCTATCAACGTTAATCGAACCAAGACGGACATGGAGGAATTCAACCGT
GTACTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTAATCGGTGGGGATCCTGGAATCGGGAAATCGACTCTTCTCCT
ACAAGTCTCAACCCAGTTGTCTCAAGTAGGGACAGTTCTCTACGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTCC
GTGCAGAGCGTTTGGGTGATATTGATAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGAGCTGAGGTA
GAAAGAATCCAGCCAAACTTCCTCATTATTGACTCCATTCAGACCATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTC
TGTTTCTCAAGTGCGTGAGGTGACAGCTGAACTTATGCAGCTGGCCAAAACTAATAACATTGCCATCTTTATCGTAGGTC
ATGTGACCAAGGAAGGAACCTTGGCTGGTCCTCGTATGCTAGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGAGAG
CGCCACCATACCTTTCGTATTTTGAGAGCGGTCAAAAACCGTTTTGGCTCCACTAATGAGATTGGGATTTTTGAGATGCA
GTCGGGCGGCTTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGAGCAACTGGTTCATCAA
TCGTTGTGACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTGACACCGACCATGTTTGGAAATGCC
AAGCGTACTACGACAGGACTTGATTTTAATCGTGCTAGCTTGATTATGGCTGTTTTAGAAAAACGGGCAGGTCTTCTCTT
GCAAAATCAGGACGCCTATCTTAAATCTGCTGGCGGTGTCAAATTGGATGAACCTGCCATTGACTTGGCCGTTGCGGTTT
CCATTGCTTCGAGTTATAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTAGGAGAGTTAGGCTTGACGGGAGAAATT
CGGCGCGTGAATCGTATTGAGCAGCGCATCAATGAAGCTGCTAAACTGGGTTTTACTAAGATTTATGTACCCAAGAATTC
CTTGACAGGAATCACTCCGCCCAAGGAAATTCAGGTCATTGGCGTAACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTG
CATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.896

99.78

0.987

  radA Streptococcus mitis SK321

98.896

99.78

0.987

  radA Streptococcus pneumoniae Rx1

98.896

99.78

0.987

  radA Streptococcus pneumoniae D39

98.896

99.78

0.987

  radA Streptococcus pneumoniae R6

98.896

99.78

0.987

  radA Streptococcus pneumoniae TIGR4

98.896

99.78

0.987

  radA Bacillus subtilis subsp. subtilis str. 168

63.135

99.78

0.63


Multiple sequence alignment