Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | ACIX56_RS06835 | Genome accession | NZ_CP173676 |
| Coordinates | 1486600..1487148 (-) | Length | 182 a.a. |
| NCBI ID | WP_005617759.1 | Uniprot ID | B3H245 |
| Organism | Actinobacillus pleuropneumoniae strain APL2303082E | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1481600..1492148
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIX56_RS06820 (ACIX56_06825) | - | 1482084..1482605 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| ACIX56_RS06825 (ACIX56_06830) | - | 1482710..1483996 (+) | 1287 | WP_005617755.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACIX56_RS06830 (ACIX56_06835) | - | 1484186..1486525 (-) | 2340 | WP_005617757.1 | Tex family protein | - |
| ACIX56_RS06835 (ACIX56_06840) | pilF | 1486600..1487148 (-) | 549 | WP_005617759.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| ACIX56_RS06840 (ACIX56_06845) | - | 1487202..1488383 (-) | 1182 | WP_005608495.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| ACIX56_RS06865 (ACIX56_06870) | gltX | 1489288..1490727 (+) | 1440 | WP_005605060.1 | glutamate--tRNA ligase | - |
| ACIX56_RS06875 (ACIX56_06880) | yefM | 1491065..1491316 (+) | 252 | WP_017357689.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| ACIX56_RS06880 (ACIX56_06885) | - | 1491313..1491573 (+) | 261 | WP_017357690.1 | Txe/YoeB family addiction module toxin | - |
| ACIX56_RS06885 (ACIX56_06890) | - | 1491732..1491899 (-) | 168 | WP_005598320.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20645.27 Da Isoelectric Point: 6.9479
>NTDB_id=1073630 ACIX56_RS06835 WP_005617759.1 1486600..1487148(-) (pilF) [Actinobacillus pleuropneumoniae strain APL2303082E]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=1073630 ACIX56_RS06835 WP_005617759.1 1486600..1487148(-) (pilF) [Actinobacillus pleuropneumoniae strain APL2303082E]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCTCAAACCACGTTTAATCGCTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCATGATCAAAACGACTACTTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCTCAAACCACGTTTAATCGCTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCATGATCAAAACGACTACTTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
66.489 |
100 |
0.687 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.199 |
93.956 |
0.434 |