Detailed information NTG1073262

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACI51X_RS06740
• Genome accession: NZ_CP173623
• Coordinates: 1509757..1510602 (+)
• Length: 281 a.a.
• NCBI ID: WP_130622713.1
• Uniprot ID: -
• Organism: Pectobacterium versatile strain M10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1504757..1515602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI51X_RS06710 (ACI51X_06725)	gspI	1505168..1505533 (+)	366	WP_044208462.1	type II secretion system minor pseudopilin GspI	-
ACI51X_RS06715 (ACI51X_06730)	gspJ	1505533..1506183 (+)	651	WP_103940956.1	type II secretion system minor pseudopilin GspJ	-
ACI51X_RS06720 (ACI51X_06735)	gspK	1506180..1507166 (+)	987	WP_010302966.1	type II secretion system minor pseudopilin GspK	-
ACI51X_RS06725 (ACI51X_06740)	gspL	1507163..1508440 (+)	1278	WP_211005770.1	type II secretion system protein GspL	-
ACI51X_RS06730 (ACI51X_06745)	gspM	1508437..1508931 (+)	495	WP_103971574.1	type II secretion system protein GspM	-
ACI51X_RS06735 (ACI51X_06750)	-	1508921..1509667 (+)	747	WP_130622712.1	type II secretion system protein N	-
ACI51X_RS06740 (ACI51X_06755)	pilD	1509757..1510602 (+)	846	WP_130622713.1	A24 family peptidase	Machinery gene
ACI51X_RS06745 (ACI51X_06760)	ypdK	1510748..1510822 (-)	75	WP_099606229.1	membrane protein YpdK	-
ACI51X_RS06750 (ACI51X_06765)	-	1511179..1512204 (-)	1026	WP_405081751.1	LLM class flavin-dependent oxidoreductase	-
ACI51X_RS06755 (ACI51X_06770)	-	1512556..1513620 (+)	1065	WP_211027437.1	ABC transporter substrate-binding protein	-
ACI51X_RS06760 (ACI51X_06775)	-	1513617..1514654 (+)	1038	WP_211027436.1	iron ABC transporter permease	-
ACI51X_RS06765 (ACI51X_06780)	-	1514656..1515426 (+)	771	WP_125232933.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31364.24 Da
• Isoelectric Point: 7.0813

>NTDB_id=1073262 ACI51X_RS06740 WP_130622713.1 1509757..1510602(+) (pilD) [Pectobacterium versatile strain M10]
MDDLREFAQLFPAWWFGSLGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGVADSDRDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGLRKEDTAKPLAFGPWLAMGGVFGVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=1073262 ACI51X_RS06740 WP_130622713.1 1509757..1510602(+) (pilD) [Pectobacterium versatile strain M10]
GTGGACGATTTAAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGATCGCTGGGCGTGTTGGGATTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCGTGGCCGATTCCGATCGTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAACAGGCTATT
GCGGTCAAAGATAATATCCCGCTATTCAGCTGGCTGTGGCTGCGAGGCCGCTCCCGCTGCTGTCATCAATCGGTCTCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATCCTGCTGTCTTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGTTGCTGTTTAATCTGTCGGGGACATTTGTTTCATTGAACGATGCCGTAGTCGGCGC
GATGGCGGGTTATTTATCTCTGTGGCTACTTTATTGGGCATTCAAATACGCCACGGGCAAAGAAGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTTTGGTGGCAGCGTTGAGC
GGTCTGGTCGTTACTCTCATCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGTTAGCTTTTGGCCCCTGGCTGGC
AATGGGTGGCGTGTTTGGTGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.554	96.441	0.488
pilD	Vibrio campbellii strain DS40M4	45.556	96.085	0.438
pilD	Neisseria gonorrhoeae MS11	46.36	92.883	0.431
pilD	Acinetobacter baumannii D1279779	42.857	97.153	0.416
pilD	Acinetobacter nosocomialis M2	42.491	97.153	0.413